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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATCCTCGGATCATTCACCGCGACATCAAGTCTGCAAATATTCTCTTGGACTTCAACTTTGATGCTATGgtgataaactagtagcttgcattcatctacggttttttgttaagactacattgatgacattttgcatttgtttattcag

Basic information

species Arabidopsis thaliana
transcript AT2G18470.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18470.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os07g04520.1 (Oryza sativa), 5'ss of exon 4
GCCATCCTCGGATCATTCACCGCGACATCAAGTCTGCAAATATTCTCTTGGACTTCAACTTTGATGCTATGgtga--taaactagtagcttg-----cattcatctacggttttttgttaagactacattgatgacattttgcatttg---tttattcag--------------
|  ||||||||||||||||||| ||||||||||| ||||| |||||| |||||  |||||| ||  |  |||| |   |||  |             |  |||| | | || || ||  || | |   | ||||      ||  | ||      |||  |              
GTAATCCTCGGATCATTCACCGTGACATCAAGTCGGCAAACATTCTCCTGGACAACAACTTCGAGCCACTGgtaaatcaaatcatcgatcaatcaatcgatcatatgctgtgttctgc-aacattgtctcgatggatcgctgactctgagaccaatttggatcatcgtgtttag

upper sequence: AT2G18470.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os03g56470.1 (Oryza sativa), 5'ss of exon 3
GCCATCCTCGGATCATTCACCGCGACATCAAGTCTGCAAATATTCTCTTGGACTTCAACTTTGATGCTATGgtgataaactagtagcttgcattcatctacggttttttgttaagactacattgatgacattttgcatttgtttattcag--------------------------
|||||||||||||||| |||||||||||||| || || || || ||| | |||  |||||| || || | ||| | |    |      ||||   || | |   ||| | |||| |  | |||| || |||||   |||     || |                            
GCCATCCTCGGATCATCCACCGCGACATCAAATCCGCCAACATCCTCCTCGACAACAACTTCGAAGCAAAGgtaacatttcaaattgctgcag--attttc--ctttcttttaaaaaaaaattgctg-catttcaaattgcggcatccgattatctgatggtttgtgtcatttcag