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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTGCGTTATTGAAAGTAGATAAGCTAGTCACTGGACATAATGCAGATGATATAGCCGAAACAGTTGTCTTAAACATACTGCGAGGCGATATTGCTAGgtaaatatatacgtttctagtgatgtttttccttgaatcttggctataatatgtctcatgtcccttaattgattgatttgtaatttggctattgtag

Basic information

species Arabidopsis thaliana
transcript AT1G76170.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G76170.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv18s0001g00440.t01 (Vitis vinifera), 5'ss of exon 5
GAGCTGCGTTATTGAAAGTAGATAAGCTAGTCACTGGACATAATGCAGATGATATAGCCGAAACAGTTGTCTTAAACATACTGCGAGGCGATATTGCTAGgtaa-atatatacgtttctagtgatgtttttccttgaatcttggctataatatgtctcatgtcc-cttaattgattgatttgtaatttggctattgtag
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GTGCTGCAATGTTGAAAGTAGACAAGCTTGCTACTGGACATAATGCAGATGATATTGCTGAAACTGTACTTTTAAACATATTACGAGGTGATATTGCCAGgtaatgcattgataggttaaactttctttttctttcaggcttcttctcgcttttctttctggctgctgagttgatgcatttactttgtag---------