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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTTAAGTCTTGGTGGAACAATGATCGGATATTACCCAGTTAGAGTCTTACCTTCAAAAACTGCTATTCTTCCAGTGAATCCCACATTTCTCCCCAGGgtaaaaaacaagaagttccatttttctcagcctgcatagtagcttacagttttagaaacaaaaatgatggtttccactatttcctttggtgttttattcag

Basic information

species Arabidopsis thaliana
transcript AT1G53650.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G53650.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G40060.1 (Glycine max), 5'ss of exon 5
GGCTTTAAGTCTTGGTGGAACAATGATCGGATATTACCCAGTTAGAGTCTTACCTTCAAAAACTGCTATTCTTCCAGTGAATCCCACATTTCTCCCCAGGgta-aaaaacaagaagttccatttttctcagcctgcatagtagct--tacagttttagaaacaaaaatgatggtttccactatttcctttggtgttttattcag-
 ||| ||| ||||||||| ||  || | ||||| || ||||| || ||  | |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||  || ||     | ||| ||||   ||     ||||||      |  ||||||     |     || ||  |   |  | ||  ||   || ||||  ||  
CGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCAGTGAATCCTACATTCCTCCCTAGGgtatgaatactttctgatcctttttataca-taaacatagtgttagatgtagttttg----cccttttgctgtatgataggaattatttgactgatttagacata

upper sequence: AT1G53650.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 5
GGCTTTAAGTCTTGGTGGAACAATGATCGGATATTACCCAGTTAGAGTCTTACCTTCAAAAACTGCTATTCTTCCAGTGAATCCCACATTTCTCCCCAGGgta-aaaaacaagaagttccatttttctcagcctgcata---gtagcttacagttttag--aaacaaaaatgatggtttccactatttcctttggtgttttattcag
 ||| ||| |||||| || ||  || | ||||| || || || || ||  | |||||||||||||| |||||||| |||||||| ||||| ||||| ||||||  || ||     | ||| ||||   ||   ||  ||   |||| ||     ||| |       | |||   |  ||     | |   || |   |         
TGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGgtatgaatactttcggatcctttttatacatagtgtttaaatgtagttttgcccttttgctgtgtgataatagagagttatttgactgatttagacatag-------

upper sequence: AT1G53650.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 5
GGCTTTAAGTCTTGGTGGAACAATGATCGGATATTACCCAGTTAGAGTCTTACCTTCAAAAACTGCTATTCTTCCAGTGAATCCCACATTTCTCCCCAGGgtaaaaaacaagaagtt-----ccatttttctcagcctgcatagtagcttacagttttagaaacaaaaatgatggtttccactat---ttcctttggtgttttattcag-----------------------------------------------------------------
 || ||||  |||||||| |||||| | || || || |||||||| |||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||||||  |      || ||     |  ||||  | |   |   |  |   ||| | |||||  | ||    ||     ||  | |     |||| ||  || | |   |                                                                   
AGCATTAAACCTTGGTGGGACAATGCTAGGTTACTATCCAGTTAGGGTCTTACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGGgtactagtggccaactttttagctgttttagttatgttaatttctgtattatacttttatta-catgtttggcccattttagtgagcattccatttttgctctgcccctgtggtttgattctcactccgtataattttttattttattttatatatgattgtaatcaaatgcag