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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGGTTGATTTGATCATTAGTTCGTTGGGGCTTCACTGGACAAATGATCTTCCTGGATCCATGATACAGgttttctcgttttcgttgctttttgttggtgtatgtgaattggtttgtcctatgagaaaatatttataatgtgttggttttggattgtaataactgcag

Basic information

species Arabidopsis thaliana
transcript AT1G22800.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22800.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os12g10200.1 (Oryza sativa), 5'ss of exon 3
TTCGGTTGATTTGATCATTAGTTCGTTGGGGCTTCACTGGACAAATGATCTTCCTGGATCCATGATACAGgtt--ttctcgttttcgttgctttttgttggtgtatgtgaattggtttgtcctatgagaaaatatttat---aatgtgttggttttggattgtaataactgcag
 |||   |||  ||| || ||||   | |||||||| |||||||||||||| |||||| | |||||||||||   || |  |||   ||| || ||| | |  ||         |||||   |||   |  ||  | |    ||||   ||||| |   |  |   |  || ||
CTCGCAGGATACGATAATAAGTTGTCTTGGGCTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtgaatttttttttagtttgattcttgctagcata---------gtttgcaatatacaactattctcagttgaatgaactggttatacttgatggcag-tgtag

upper sequence: AT1G22800.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G087692_T02 (Zea mays), 5'ss of exon 3
TTCGGTTGATTTGATCATTAGTTCGTTGGGGCTTCACTGGACAAATGATCTTCCTGGATCCATGATACAGgt----tttctcgttttcgttgctttttgttggtgtatgtga-------attggtttgtcctatg-agaaaatatttataatgtgttggtt-ttggattgtaataactgcag-------------
 ||    |||||||| || || |   | || ||||| |||||||||||||| |||||| | |||||||||||    ||  |    |       ||| | ||| | |    |        | ||||  ||  |||  | |||  ||   | |  | ||| |   ||| |  | || ||                  
CTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttcttaacctgaaccagtttatattgctatgcaaggtctctacaatggtcagttatatacataaagaataccttaactattgatagctggttaattattaccttttccttgcagtgtag

upper sequence: AT1G22800.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G087692_T01 (Zea mays), 5'ss of exon 3
TTCGGTTGATTTGATCATTAGTTCGTTGGGGCTTCACTGGACAAATGATCTTCCTGGATCCATGATACAGg----ttttctcgttttcgttgctttttgttggtgtatgtga-------attggtttgtcctatg-agaaaatatttataatgtgttggtt-ttggattgtaataactgcag--------
       |||||||| || || |   | || ||||| |||||||||||||| |||||| | ||||||||||    |||  |    |       ||| | ||| | |    |        | ||||  ||  |||  | |||  ||   | |  | ||| |   ||| |  | || ||             
-------GATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttcttaacctgaaccagtttatattgctatgcaaggtctctacaatggtcagttatatacataaagaataccttaactattgatagctggttaattattaccttttccttgcag

upper sequence: AT1G22800.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G087692_T03 (Zea mays), 5'ss of exon 3
TTCGGTTGATTTGATCATTAGTTCGTTGGGGCTTCACTGGACAAATGATCTTCCTGGATCCATGATACAGgt----tttctcgttttcgttgctttttgttggtgtatg-------tgaattggtttgtcctatg-agaaaatatttataatgtgttggtt-ttggattgtaataactgcag--------
 ||    |||||||| || || |   | || ||||| |||||||||||||| |||||| | |||||||||||    ||  |    |       ||| | ||| | |          |  | ||||  ||  |||  | |||  ||   | |  | ||| |   ||| |  | || ||             
CTCACAGGATTTGATAATGAGCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttcttaacctgaaccagtttatattgctatgcaaggtctctacaatggtcagttatatacataaagaataccttaactattgatagctggttaattattaccttttccttgcag

upper sequence: AT1G22800.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv18s0001g06830.t01 (Vitis vinifera), 5'ss of exon 5
TTCGGTTGATTTGATCATTAGTTCGTTGGGGCTTCACTGGACAAATGATCTTCCTGGATCCATGATACAGgttttctcgttttc-gttgctttttgttggtgtatgtgaattggtttgtcctatgagaaaatatttataatgtgttggttttggattgtaataactgcag----
|||  | ||| || | || || |  ||||| || || ||||| ||||||||||||||| |||||||||||||   ||  |||   |||| | |   ||   ||||    || |   ||||  |  |   || | | ||   |   ||||  |    | |     ||| ||    
TTCTCTAGATCTGGTAATCAGCTGCTTGGGACTCCATTGGACGAATGATCTTCCTGGAGCCATGATACAGgtaagcttctttagagttgttatggttttaagtattgttatcga--tgtctcaaaactcaaaagtgatg--ggcctggtgctacgctatgtcttctgaagtgca