1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGTTGTCAGAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataatagtccctagtttacatacataatttactcctacttgtgtgtttaatctcaaagaatcaattcatatatacataaaaaaatag
species | Arabidopsis thaliana |
transcript | AT5G66170.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGNNNGATEST: gi|86063042|gb|DR358799.1|DR358799
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063006|gb|DR358763.1|DR358763
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTEST: gi|86087471|gb|DR383230.1|DR383230
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063026|gb|DR358783.1|DR358783
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063037|gb|DR358794.1|DR358794
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACTTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063041|gb|DR358798.1|DR358798
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACTTGGGAGGTGGCTACTTGGCTTEST: gi|86063021|gb|DR358778.1|DR358778
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86072845|gb|DR368602.1|DR368602
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063015|gb|DR358772.1|DR358772
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACTTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063023|gb|DR358780.1|DR358780
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063005|gb|DR358762.1|DR358762
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063010|gb|DR358767.1|DR358767
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063020|gb|DR358777.1|DR358777
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063044|gb|DR358801.1|DR358801
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063008|gb|DR358765.1|DR358765
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86018801|gb|DR314547.1|DR314547
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAARAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTAGATEST: gi|86063039|gb|DR358796.1|DR358796
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063035|gb|DR358792.1|DR358792
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063038|gb|DR358795.1|DR358795
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063013|gb|DR358770.1|DR358770
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063048|gb|DR358805.1|DR358805
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063016|gb|DR358773.1|DR358773
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063017|gb|DR358774.1|DR358774
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063022|gb|DR358779.1|DR358779
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGT--AGCCAGATCCTTAARAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|301502023|gb|HO207563.1|HO207563
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063043|gb|DR358800.1|DR358800
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGEST: gi|47832061|gb|CK121745.1|CK121745
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGG
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063024|gb|DR358781.1|DR358781
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAEST: gi|86063027|gb|DR358784.1|DR358784
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAA-GTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGA
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063018|gb|DR358775.1|DR358775
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063031|gb|DR358788.1|DR358788
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACTTGGGAGGTGSCTACTTGGCTTGGGTGGATEST: gi|86063045|gb|DR358802.1|DR358802
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063009|gb|DR358766.1|DR358766
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTNTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063033|gb|DR358790.1|DR358790
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACTTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063046|gb|DR358803.1|DR358803
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063014|gb|DR358771.1|DR358771
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063040|gb|DR358797.1|DR358797
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063034|gb|DR358791.1|DR358791
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGATEST: gi|86063019|gb|DR358776.1|DR358776
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
EST: GAGTGGAGCCAGATCCTTAARAGCCACAACTGAACTTGTTGCTGCAG--- G-TTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
genomic: GAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataata ... aaaaaaatagGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGGCTTGGGTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGTCAGAGTGGAGCCAGATCCTTAAAAGCCACAACTGAACTTGTTGCTGCAGTAAgtgtataatagtccctagtttacatacataatttactcctacttgtgtgtttaatctcaaagaatcaattcatatatacataaaaaaatag
- - - - AGTGGA
- - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - CTGCAG