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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGACGATGAATTAAAGTCAATTTTTGGTCAATTTGGTGAACTTCTTCATGTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAAgtataaaacatcatatcagccattcattatgaattccattttttcttgcttacttcattattctctttgttgtgcttcag

Basic information

species Arabidopsis thaliana
transcript AT5G54900.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86054573|gb|DR350330.1|DR350330
EST:     GTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAA                         GGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGG
genomic: GTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAAgtataaaaca ... tgtgcttcagGGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGG
EST: gi|116479564|gb|EG522156.1|EG522156
EST:     GTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAA                         GGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGG
genomic: GTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAAgtataaaaca ... tgtgcttcagGGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGG
EST: gi|164146035|gb|ES197660.1|ES197660
EST:     AACGTTGTGGATTCGTTCAATATGCCAACAA                         GGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGG
genomic: AACGTTGTGGATTCGTTCAATATGCCAACAAgtataaaaca ... tgtgcttcagGGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGG
EST: gi|125249390|gb|EL263475.1|EL263475
EST:     GTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAA                         GGCGTCTGCAGAGCATGCACTTTCGGT
genomic: GTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAAgtataaaaca ... tgtgcttcagGGCGTCTGCAGAGCATGCACTTTCGGT
EST: gi|164100796|gb|ES054937.1|ES054937
EST:     GTGGATTCGTTCAATATGCCAACAA                         GGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAAACACAATTAGGTG
genomic: GTGGATTCGTTCAATATGCCAACAAgtataaaaca ... tgtgcttcagGGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAA-CACAATTAGGTG
EST: gi|124744674|gb|EH835836.1|EH835836
EST:     GGATTCGTTCAATATGCCAACAA                         GGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGG
genomic: GGATTCGTTCAATATGCCAACAAgtataaaaca ... tgtgcttcagGGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGG
EST: gi|86083467|gb|DR379226.1|DR379226
EST:     GTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAA                         GGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGG
genomic: GTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAAgtataaaaca ... tgtgcttcagGGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGG
EST: gi|116479553|gb|EG522145.1|EG522145
EST:     GTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAA                         GGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGG
genomic: GTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAAgtataaaaca ... tgtgcttcagGGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGG