1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGTCATTGTCTCCTCCATCATTATCTTCCGCACTCCAGTCCAGCCCGTCAATGCTCTTGGAGCAGCCATTGCTATCCTTGGAACCTTCTTGTATTCCCAGgtaaacataaccttaccttgaccaaaatacccttattatccatatcatatatgataaataaaaagcgtcttctgcatcacttcacacccacatgatgaga...
species | Arabidopsis thaliana |
transcript | AT5G54800.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAACCGTTCTTGTATTCCCAG GCAAAGCTCTGATGCGAAAGACATAAGAGTGTAATAAGGGTCTGGTEST: gi|124979022|gb|EL052125.1|EL052125
genomic: GAACC-TTCTTGTATTCCCAGgtaaacataa ... tgttttgcagGCAAAGCTCTGATGCGAAAGACATAAGAGTGTAATAAGGGTCTGGT
EST: TGCTCTTGGAGCAGCCATTGCTATCCTTGGAACCTTCTTGTATTCCCAG GCAAAGCTCTGATGCGAAAAGACATAAGAGTGTAATAAGGGTCTGGTGTTEST: gi|164134503|gb|ES111941.1|ES111941
genomic: TGCTCTTGGAGCAGCCATTGCTATCCTTGGAACCTTCTTGTATTCCCAGgtaaacataa ... tgttttgcagGCAAAGCTCTGATGCGAAA-GACATAAGAGTGTAATAAGGGTCTGGTGTT
EST: TTCTTGTATTCCCAG GCAAAGCTCTGATGCGAAAGACATAAGAGTGTAATAAGGGTCTGGTGTTGA
genomic: TTCTTGTATTCCCAGgtaaacataa ... tgttttgcagGCAAAGCTCTGATGCGAAAGACATAAGAGTGTAATAAGGGTCTGGTGTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCATTGTCTCCTCCATCATTATCTTCCGCACTCCAGTCCAGCCCGTCAATGCTCTTGGAGCAGCCATTGCTATCCTTGGAACCTTCTTGTATTCCCAGgtaaacataaccttaccttgaccaaaatacccttattatccatatcatatatgataaataaaaagcgtcttctgcatcacttcacacccacatgatgaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaccaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtcttct