1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAGgtaaattatcatttttttttgcctaaacatcattactgagttgcgaccacacagttatcaaaatctgacagcttttcttctcacttgtttattgacctctcttcag
species | Arabidopsis thaliana |
transcript | AT5G45170.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAG ATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGEST: gi|116478591|gb|EG521183.1|EG521183
genomic: AAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAGgtaaattatc ... ctctcttcagATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAG
EST: AAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAG ATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAGEST: gi|124928860|gb|EL006463.1|EL006463
genomic: AAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAGgtaaattatc ... ctctcttcagATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAG
EST: TTTGTATTTCAACCAG ATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAGEST: gi|125191254|gb|EL206208.1|EL206208
genomic: TTTGTATTTCAACCAGgtaaattatc ... ctctcttcagATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAG
EST: TTTGTATTTCAACCAG ATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAGEST: gi|124834897|gb|EH919336.1|EH919336
genomic: TTTGTATTTCAACCAGgtaaattatc ... ctctcttcagATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAG
EST: GAAAAGGTGCTGCTGATGAAGNGAAAATGTTGCTTTTGTATTTCAACCAG ATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAGEST: gi|124880336|gb|EH959238.1|EH959238
genomic: GAAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAGgtaaattatc ... ctctcttcagATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAG
EST: TTTGTATTTCAACCAG ATTGGTTGGCCTTCGTCGTTGCCAACCAAGTGAGAAAGCAAGTTTTGTAAAEST: gi|116478590|gb|EG521182.1|EG521182
genomic: TTTGTATTTCAACCAGgtaaattatc ... ctctcttcagATTGGTTGGCCTTCGTCGTTGCCAACC-AGTGAGAAAGCAAGTTTTGTAAA
EST: AAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAG ATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAGEST: gi|124972173|gb|EL045884.1|EL045884
genomic: AAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAGgtaaattatc ... ctctcttcagATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAG
EST: CTTTTGTATTTCAACCAG ATTGGTTGG-CTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAG
genomic: CTTTTGTATTTCAACCAGgtaaattatc ... ctctcttcagATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAGgtaaattatcatttttttttgcctaaacatcattactgagttgcgaccacacagttatcaaaatctgacagcttttcttctcacttgtttattgacctctcttcag
- - - TGCTGC
- - - GCTGCT
- - - - - GCTGAT
- - - - - - - TGAAGA
- - - - - - - - AAGAGA