1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTTCTTGCGGCCACTCAAACGCCAGGAGAATCTGGTAAAAGGTGGTTCCAAGGTACAGCAGATGCGGTTCGGCAATTCCATTGGCTTTTCGAGgtagaaatcagacttaaactagcttatcatcacatcaatagacaagcggtccaacattcttttcatag
species | Arabidopsis thaliana |
transcript | AT5G19220.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGTTCCAAGGTACAGCAGATGCGGTTCGGCAATTCCATTGGCTTTTCGAG GATGCAAGAAGCAAGGACAEST: gi|125243011|gb|EL257096.1|EL257096
genomic: GGTTCCAAGGTACAGCAGATGCGGTTCGGCAATTCCATTGGCTTTTCGAGgtagaaatca ... cttttcatagGATGCAAGAAGCAAGGACA
EST: GGTTCCAAGGTACAGCAGATGCGGTTCGGCAATTCCATTGGCTTTTCGAG GATGCAAGAAGCAAGGACATEST: gi|116473342|gb|EG515934.1|EG515934
genomic: GGTTCCAAGGTACAGCAGATGCGGTTCGGCAATTCCATTGGCTTTTCGAGgtagaaatca ... cttttcatagGATGCAAGAAGCAAGGACAT
EST: GGTTCCAAGGTACAGCAGATGCGGTTCGGCAATTCCATTGGCTTTTCGAG GATGCAAGAAGCAAGGACATAGAGGATGTATTGATCCTTTCTGGAGATCACEST: gi|124892158|gb|EH971060.1|EH971060
genomic: GGTTCCAAGGTACAGCAGATGCGGTTCGGCAATTCCATTGGCTTTTCGAGgtagaaatca ... cttttcatagGATGCAAGAAGCAAGGACATAGAGGATGTATTGATCCTTTCTGGAGATCAC
EST: GGTTCCAAGGTACAGCAGATGCGGTTCGGCAATTCCATTGGCTTTTCGAG GATGCAAGAAGCAAGGACATAGAGGATGTATTGA
genomic: GGTTCCAAGGTACAGCAGATGCGGTTCGGCAATTCCATTGGCTTTTCGAGgtagaaatca ... cttttcatagGATGCAAGAAGCAAGGACATAGAGGATGTATTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTTGCGGCCACTCAAACGCCAGGAGAATCTGGTAAAAGGTGGTTCCAAGGTACAGCAGATGCGGTTCGGCAATTCCATTGGCTTTTCGAGgtagaaatcagacttaaactagcttatcatcacatcaatagacaagcggtccaacattcttttcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG