1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATAAAGCTACACTTCCGAATTTCTATGTTGCTGCTGGAATTGGGGGAGAGAGACAGTTCCCTCAATGGTACAAAGAGAAAGgtgagtttcctttttttttgtgctttaagcgtttttttagctcaatgtctctcattcattctcatatgtcgtttctgcag
species | Arabidopsis thaliana |
transcript | AT5G03630.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAATGGTACAAAGAGAAAG GTATTGAGCTGATTTTGGGCACAGAGATTGTCAAAGCAGATCTTGCTGCGAEST: gi|47828725|gb|CK118409.1|CK118409
genomic: CAATGGTACAAAGAGAAAGgtgagtttcc ... gtttctgcagGTATTGAGCTGATTTTGGGCACAGAGATTGTCAAAGCAGATCTTGCTGCGA
EST: TGCTGGAATTGGGGGAGAGAGACAGTTCCCTCAATGGTACAAAGAGAAAG GTATTGAGCTGATTTTGGGCACAGAGATTGTCAAAGCAGATCTTGCTGCGAEST: gi|124844947|gb|EH929384.1|EH929384
genomic: TGCTGGAATTGGGGGAGAGAGACAGTTCCCTCAATGGTACAAAGAGAAAGgtgagtttcc ... gtttctgcagGTATTGAGCTGATTTTGGGCACAGAGATTGTCAAAGCAGATCTTGCTGCGA
EST: TGCTGGAATTGGGGGAGAGAGACAGTTCCCTCAATGGTACAAAGAGAAAG GTATTGAGCTGAEST: gi|125018196|gb|EL090465.1|EL090465
genomic: TGCTGGAATTGGGGGAGAGAGACAGTTCCCTCAATGGTACAAAGAGAAAGgtgagtttcc ... gtttctgcagGTATTGAGCTGA
EST: TGCTGGAATTGGGGGAGAGAGACAGTTCCCTCAATGGTACAAAGAGAAAG GTATTGAGCTGATTTTGGGCAEST: gi|125256452|gb|EL270537.1|EL270537
genomic: TGCTGGAATTGGGGGAGAGAGACAGTTCCCTCAATGGTACAAAGAGAAAGgtgagtttcc ... gtttctgcagGTATTGAGCTGATTTTGGGCA
EST: TGCTGGAATTGGGGGAGAGAGACAGTTCCCTCAATGGTACAAAGAGAAAG GTATTGAGCTGAT
genomic: TGCTGGAATTGGGGGAGAGAGACAGTTCCCTCAATGGTACAAAGAGAAAGgtgagtttcc ... gtttctgcagGTATTGAGCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAAGCTACACTTCCGAATTTCTATGTTGCTGCTGGAATTGGGGGAGAGAGACAGTTCCCTCAATGGTACAAAGAGAAAGgtgagtttcctttttttttgtgctttaagcgtttttttagctcaatgtctctcattcattctcatatgtcgtttctgcag
- - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA