1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGGGTTTACACAGAATCAGCTCACACTTTGGAAGTATCCATCCATGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGgtaaaggaaaacaactaaatcaatttttaactgttgaaagtagttggagatgtttgaggtctttagtcctaaaacttgtgttgtttgtgttgtatttcttacag
species | Arabidopsis thaliana |
transcript | AT4G33270.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAG AGTCCAGATGGTTGTACCGTAGCTTCAGCAGCAGEST: gi|164060315|gb|EL998839.1|EL998839
genomic: AAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGgtaaaggaaa ... tttcttacagAGTCCAGATGGTTGTACCGTAGCTTCAGCAGCAG
EST: AATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAG AGTCCAGATGGTTGTACTGTAGCTTCAGCAGCAGEST: gi|164014960|gb|ES190195.1|ES190195
genomic: AATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGgtaaaggaaa ... tttcttacagAGTCCAGATGGTTGTACCGTAGCTTCAGCAGCAG
EST: ATACATCAAGAGTTCTATATATGG-CCAG AGTCCAGATGGTTGTACCGTAGCTTCAGCAGCAGGAGATGAGACTCTGAGG
genomic: ATACATCAAGAGTTCTATATATGGCCCAGgtaaaggaaa ... tttcttacagAGTCCAGATGGTTGTACCGTAGCTTCAGCAGCAGGAGATGAGACTCTGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGGTTTACACAGAATCAGCTCACACTTTGGAAGTATCCATCCATGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGgtaaaggaaaacaactaaatcaatttttaactgttgaaagtagttggagatgtttgaggtctttagtcctaaaacttgtgttgtttgtgttgtatttcttacag
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