1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAAATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGgtttccattcactttttatgcttcagtgaaaatagacatacccttataagattggtttaagcttcaagtttatgattctttctgtatccatgtag
species | Arabidopsis thaliana |
transcript | AT4G22890.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAG ATTGATGGTAGCGACATTGTGAGCGAGGGTEST: gi|125320430|gb|EL334515.1|EL334515
genomic: ATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGgtttccattc ... atccatgtagATTGATGGTAGCGACATTGTGAGCGAGGGT
EST: CTCAAACTCAAACTAAAG ATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAAGEST: gi|125324433|gb|EL338513.1|EL338513
genomic: CTCAAACTCAAACTAAAGgtttccattc ... atccatgtagATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTA-G
EST: CAAACTCAAACTAAAG ATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGTEST: gi|116431831|gb|EG474423.1|EG474423
genomic: CAAACTCAAACTAAAGgtttccattc ... atccatgtagATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGT
EST: ATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAG ATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGTEST: gi|86028473|gb|DR324226.1|DR324226
genomic: ATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGgtttccattc ... atccatgtagATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGT
EST: ATCCAATCTTGAATGATGAAGAATATGATAAGCTCANACTCAAACTAAAG ATTGATGGTAGCGACAEST: gi|124939283|gb|EL015837.1|EL015837
genomic: ATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGgtttccattc ... atccatgtagATTGATGGTAGCGACA
EST: TCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAG ATTGATGGTAGCGACATTGTGAGCGGGGGTCCAAGATGCAGTCTCCGTAGTEST: gi|116431832|gb|EG474424.1|EG474424
genomic: TCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGgtttccattc ... atccatgtagATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGT
EST: ATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAG ATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGTEST: gi|124866639|gb|EH951076.1|EH951076
genomic: ATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGgtttccattc ... atccatgtagATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGT
EST: TCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAG ATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCEST: gi|124921247|gb|EH994882.1|EH994882
genomic: TCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGgtttccattc ... atccatgtagATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTC
EST: AATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAG ATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGAEST: gi|125155694|gb|EL185677.1|EL185677
genomic: AATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGgtttccattc ... atccatgtagATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGA
EST: AATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAG ATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCC-TAGTEST: gi|125207815|gb|EL222769.1|EL222769
genomic: AATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGgtttccattc ... atccatgtagATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGT
EST: GATAAGCTCAAACTCAAACTAAAG ATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGTEST: gi|164006220|gb|ES124350.1|ES124350
genomic: GATAAGCTCAAACTCAAACTAAAGgtttccattc ... atccatgtagATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGT
EST: CAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAG ATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCEST: gi|116424112|gb|EG466704.1|EG466704
genomic: CAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGgtttccattc ... atccatgtagATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTC
EST: ATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAACCTAAAG ATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGTEST: gi|125012342|gb|EL084611.1|EL084611
genomic: ATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGgtttccattc ... atccatgtagATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGT
EST: AATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAG ATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGT
genomic: AATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGgtttccattc ... atccatgtagATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAAATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGgtttccattcactttttatgcttcagtgaaaatagacatacccttataagattggtttaagcttcaagtttatgattctttctgtatccatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA