1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAACCGTCATGGTGATTTCTTCTCTGCTTTGATGAAAGCTCAGCCTCAGTTCCTCAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGgtaattaaactaaactctctttagttctcaatgtgtcttgcacattggcctaaccagtaagaggattggctttacag
species | Arabidopsis thaliana |
transcript | AT3G56940.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCTCAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCG GTTTATGTGACAATGTAEST: gi|124746737|gb|EH837049.1|EH837049
genomic: TCCTCAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGgtaattaaac ... ggctttacagGTTTATGTGACAATGTA
EST: TCCTCAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCG GTTTATGTGACAATGTACCTCAATGACTGCCAAAGAACTAATTTEST: gi|125310220|gb|EL324305.1|EL324305
genomic: TCCTCAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGgtaattaaac ... ggctttacagGTTTATGTGACAATGTACCTCAATGACTGCCAAAGAACTAATTT
EST: TGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCG GTTTATGTGACAATGTACCTCAATGACTGCCAAAGAACTAATTTCTAEST: gi|124933260|gb|EL010435.1|EL010435
genomic: TGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGgtaattaaac ... ggctttacagGTTTATGTGACAATGTACCTCAATGACTGCCAAAGAACTAATTTCTA
EST: CAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCG GTTTATGTGACAATGTACCTCAATGACTGCCAAAGAACTAATTTCTACGAGEST: gi|124883839|gb|EH962741.1|EH962741
genomic: CAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGgtaattaaac ... ggctttacagGTTTATGTGACAATGTACCTCAATGACTGCCAAAGAACTAATTTCTACGAG
EST: GCTCTGGTCTCGCTTCTTCTGCCTCTCGG GTTTATGTGACAATGTACCTCAATAGACTGCCAAAGAACTAATTTCTACGEST: gi|125047522|gb|EL119791.1|EL119791
genomic: GCTCTGGTCTCGCTTCTTCTGCCTCTC-Ggtaattaaac ... ggctttacagGTTTATGTGACAATGTACCTCAAT-GACTGCCAAAGAACTAATTTCTACG
EST: CAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCG GTTTATGTGACAATGTACCTCAATGACTGCCAAAGAACTAATTTCTACGAGEST: gi|124940070|gb|EL016555.1|EL016555
genomic: CAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGgtaattaaac ... ggctttacagGTTTATGTGACAATGTACCTCAATGACTGCCAAAGAACTAATTTCTACGAG
EST: CTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCG GTTTATGTGACAATGTACCTCAATGACTGCCAAAGAACTAATTTCTACGAGEST: gi|124823977|gb|EH908843.1|EH908843
genomic: CTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGgtaattaaac ... ggctttacagGTTTATGTGACAATGTACCTCAATGACTGCCAAAGAACTAATTTCTACGAG
EST: CCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCG GTTTATGTGACAATGTACCTCAATGACTGCCAAAGAACTAATTTCTACGAGEST: gi|163983150|gb|ES111796.1|ES111796
genomic: CCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGgtaattaaac ... ggctttacagGTTTATGTGACAATGTACCTCAATGACTGCCAAAGAACTAATTTCTACGAG
EST: CCTTCAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCG GTTTATGTGACAA
genomic: CC-TCAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGgtaattaaac ... ggctttacagGTTTATGTGACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACCGTCATGGTGATTTCTTCTCTGCTTTGATGAAAGCTCAGCCTCAGTTCCTCAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGgtaattaaactaaactctctttagttctcaatgtgtcttgcacattggcctaaccagtaagaggattggctttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT