Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGCTGGAGATGGCTCGTTCTCTCTGAAGACCAGCAAGGGAACTGTTGAGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAGgtatagtgtgatttttattattttccaaaggatgtttataaaatgaaaactggtagcaaagttcatcctttaataatttgtctaagataaactgaccactgctgccccttgtttatgactttaatggaatatgattgttcattgatgtaatgttggctgttataacag

Basic information

species Arabidopsis thaliana
transcript AT3G54660.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124966906|gb|EL040977.1|EL040977
EST:     GATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAG                         AACTTAGGGTTGGAGAATGTTGGCGTTAAAATGG
genomic: GATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAGgtatagtgtg ... gttataacagAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGG
EST: gi|86059409|gb|DR355166.1|DR355166
EST:     AGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAG                         AACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATA
genomic: AGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAGgtatagtgtg ... gttataacagAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATA
EST: gi|125139238|gb|EL178116.1|EL178116
EST:     TTTGCAACTGGTCGCAAGCCCAACACAAAG                         AACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATA
genomic: TTTGCAACTGGTCGCAAGCCCAACACAAAGgtatagtgtg ... gttataacagAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATA
EST: gi|86059408|gb|DR355165.1|DR355165
EST:     AGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAG                         AACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATA
genomic: AGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAGgtatagtgtg ... gttataacagAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATA
EST: gi|124756096|gb|EH846226.1|EH846226
EST:     CTGGTCGCAAGCCCAACACAAAG                         AACTTAGGGTTGGAGA
genomic: CTGGTCGCAAGCCCAACACAAAGgtatagtgtg ... gttataacagAACTTAGGGTTGGAGA
EST: gi|47828527|gb|CK118211.1|CK118211
EST:     AGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAG                         AACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATA
genomic: AGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAGgtatagtgtg ... gttataacagAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATA