1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAAGATATCTCCAATTGAAGTGGATGCAGTACTCTTAACGCATCCTGACGTTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAGgtaaacaaaacctgtgcttaaattgtctctaatttgaatttatgaattggtctcccttatctaccattatgtcctgcagaatcatcaaacatcatgtgaacttacttatcaatgagctgttaataacgctgtgtttccctggtttattggtttatcag
species | Arabidopsis thaliana |
transcript | AT3G48990.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAG ATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGACEST: gi|125326749|gb|EL340829.1|EL340829
genomic: TTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAGgtaaacaaaa ... ggtttatcagATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGAC
EST: AGAAATATGGGGAAGAG ATTAACTGTGCGGTTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGAEST: gi|116467688|gb|EG510280.1|EG510280
genomic: AGAAATATGGGGAAGAGgtaaacaaaa ... ggtttatcagATTAACTGTGCGG-TGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGA
EST: TTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAG ATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGACEST: gi|116467687|gb|EG510279.1|EG510279
genomic: TTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAGgtaaacaaaa ... ggtttatcagATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGAC
EST: TTTTTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAG ATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGACEST: gi|125106712|gb|EL160101.1|EL160101
genomic: TTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAGgtaaacaaaa ... ggtttatcagATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGAC
EST: AAATATGGGGAAGAG ATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGACEST: gi|86081105|gb|DR376862.1|DR376862
genomic: AAATATGGGGAAGAGgtaaacaaaa ... ggtttatcagATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGAC
EST: TTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAG ATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGACEST: gi|116483995|gb|EG526587.1|EG526587
genomic: TTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAGgtaaacaaaa ... ggtttatcagATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGAC
EST: TTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAG ATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGACEST: gi|116464394|gb|EG506986.1|EG506986
genomic: TTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAGgtaaacaaaa ... ggtttatcagATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGAC
EST: TTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAG ATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAGGAGGACEST: gi|116464272|gb|EG506864.1|EG506864
genomic: TTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAGgtaaacaaaa ... ggtttatcagATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGAC
EST: TTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAG ATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAGGAGGAC
genomic: TTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAGgtaaacaaaa ... ggtttatcagATTAACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGATATCTCCAATTGAAGTGGATGCAGTACTCTTAACGCATCCTGACGTTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAGgtaaacaaaacctgtgcttaaattgtctctaatttgaatttatgaattggtctcccttatctaccattatgtcctgcagaatcatcaaacatcatgtgaacttacttatcaatgagctgttaataacgctgtgtttccctggtttattggtttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA