1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCATTCTGCTGGTTACTCTGGCGCATTGGCAAATCCATTGTATGCACCTGAATCTGCAATTACTGGATTGACTGGGGAGGTCTTGGAGAATTTTGTTTTTgtaagaccgttaacacaagagattattgcattcgctggaactagtatcactggcttttggtttgttatttcgtagatgtgtcttttttctcattttgttctgaaatttcag
species | Arabidopsis thaliana |
transcript | AT3G16480.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATTACTGGATTGACTGGGGAGGTCTTGGAGAATTTTGTTTTT GAGAATTACACTGCTTCACGAATGGTCCTAGCAGCTAGTGGAGTTGATCATEST: gi|125238233|gb|EL252318.1|EL252318
genomic: AATTACTGGATTGACTGGGGAGGTCTTGGAGAATTTTGTTTTTgtaagaccgt ... gaaatttcagGAGAATTACACTGCTTCACGAATGGTCCTAGCAGCTAGTGGAGTTGATCAT
EST: GACTGGGGAGGTCTTGGAGAATTTTGTTTTT GAGAATTACACTGCTTCACGAATGGTCCTAGCAGCTAGTGGAGTTG
genomic: GACTGGGGAGGTCTTGGAGAATTTTGTTTTTgtaagaccgt ... gaaatttcagGAGAATTACACTGCTTCACGAATGGTCCTAGCAGCTAGTGGAGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATTCTGCTGGTTACTCTGGCGCATTGGCAAATCCATTGTATGCACCTGAATCTGCAATTACTGGATTGACTGGGGAGGTCTTGGAGAATTTTGTTTTTgtaagaccgttaacacaagagattattgcattcgctggaactagtatcactggcttttggtttgttatttcgtagatgtgtcttttttctcattttgttctgaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA