1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTCTGTTCTGGTGACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGATGGCAAAGCTgtacatgtttcaatgagtttttacttatctcgttttaaatcttgttctgcctcttgaatctcgattttgcttatcag
species | Arabidopsis thaliana |
transcript | AT3G02600.5 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGATGGCAAAGCT CTTTATGATAGCCTTEST: gi|124771508|gb|EH861638.1|EH861638
genomic: GTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGATGGCAAAGCTgtacatgttt ... tgcttatcagCTTTATGATAGCCTT
EST: CTTCTTCTGGCGTTGTTTTCCAGATGGCAAAGCT CTTTATGATAGCCTTGGAGATGTTATATGCCAEST: gi|164001135|gb|ES075038.1|ES075038
genomic: CTTCTTCTGGCGTTGTTTTCCAGATGGCAAAGCTgtacatgttt ... tgcttatcagCTTTATGATAGCCTTGGAGATGTTATATGCCA
EST: GTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGATGGCAAAGCT CTTTATGATAGCCTTGGAGATGTTATATG
genomic: GTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGATGGCAAAGCTgtacatgttt ... tgcttatcagCTTTATGATAGCCTTGGAGATGTTATATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTGTTCTGGTGACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGATGGCAAAGCTgtacatgtttcaatgagtttttacttatctcgttttaaatcttgttctgcctcttgaatctcgattttgcttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG