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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATCCAATGTGGGTTATGAATGTGGTTCCATTTGATCTTAAACCGAACACACTCGGTGTTGTGTATGATCGCGGTCTCATTGGAACTTACATGAACTGgtaaatcactcaaaacgtctctgatatcatctaatttgacatctcttataccatattttccggtttttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G43200.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G43200.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv05s0124g00530.t01 (Vitis vinifera), 5'ss of exon 4
AATATCCAATGTGGGTTATGAATGTGGTTCCATTTGATCTTAAACCGAACACACTCGGTGTTGTGTATGATCGCGGTCTCATTGGAACTTACATGAACTGgtaaatcactcaaaacgt-ctctgatatcatctaatttgacatctctta---taccatattttccggtttttgtag------------------------------------------------------------------------------------------------------------
|  | | | | |||||||||||||| ||||| ||||||    ||   ||||| || ||  |||| ||||| || || |||||||||||||||||||||||||||  |    || | ||  |||  ||   |  ||     | |    ||   |  | ||||        ||||| |                                                                                                            
AGCAACAAGTTTGGGTTATGAATGTTGTTCCTTTTGATGCACAAAACAACACTCTTGGGATTGTCTATGAGCGTGGCCTCATTGGAACTTACATGAACTGgtaagacttgtaacatgtattcttgtagtttacaaagaaccgtgcaatactttgacctattaaagtacctttgtggctgttgctgtcaatttatgaattaaatcgagtttggaaatgatttatgccttcttctatttgtttttaagggtgaaaatattgagagtacatcaatacttgcttgcag