1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGTGCAGTGATGTTGAGAAGGAAGTTTTATCCTGCAGCCAACAAGTTTTTGCAACAAGCTATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAGgtaatagacttttacactaataccgttaccaagtaaataaaaaatcaattgacactgcaatatacaattcctgagacag
species | Arabidopsis thaliana |
transcript | AT1G22700.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCAACAAGCTATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAG GTCTATAACGCTCTTGGAGTGAGTTATGTACEST: gi|164047550|gb|ES172005.1|ES172005
genomic: TGCAACAAGCTATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAGgtaatagact ... cctgagacagGTCTATAACGCTCTTGGAGTGAGTTATGTAC
EST: AACAAGCTATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAG GTCTATAACGCTCTTGGAGTGAGTTATGTACGAGAGGATAAACTTGACAAAEST: gi|86075309|gb|DR371066.1|DR371066
genomic: AACAAGCTATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAGgtaatagact ... cctgagacagGTCTATAACGCTCTTGGAGTGAGTTATGTACGAGAGGATAAACTTGACAAA
EST: TGCAACAAGCTATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAG GTCTATAACGCTCTTGGAGTGAGTTATGTACGAGAGGATAAACTTGACAAA
genomic: TGCAACAAGCTATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAGgtaatagact ... cctgagacagGTCTATAACGCTCTTGGAGTGAGTTATGTACGAGAGGATAAACTTGACAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGCAGTGATGTTGAGAAGGAAGTTTTATCCTGCAGCCAACAAGTTTTTGCAACAAGCTATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAGgtaatagacttttacactaataccgttaccaagtaaataaaaaatcaattgacactgcaatatacaattcctgagacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT