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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCTGTTGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTTCCCTGACGGTATAGGGgtaagcagcacacatctccttgcttactcttataaaaccttggataaactctgactggttgaatttctgaaattctag

Basic information

species Arabidopsis thaliana
transcript AT1G15080.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15080.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os08g27040.1 (Oryza sativa), 5'ss of exon 5
CTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCTGTTGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTTCCCTGACGGTATAGGGgtaagcagcacacatct---ccttgcttactcttataaaaccttggataaact-ctgactg-gttgaatttctgaa--attctag-------
 || ||||||||||| | ||| || || ||||| || ||||| | ||||||||| ||||| || |||||||||||||||||||||||||| || |||   |||| |  |            | || |  |   ||| |||| |    ||  || | |  |   ||||| |    ||   ||  |        
TTCGGTACTTATAACTGCTGTGATTACTGATGCAATTAAGGATGGTGTTGGTCGTCCTCGCCCAGATTTCTTTTGGCGTTGTTTCCCTGATGGAATACCTgtaatctccttgtgctagtgtcctgatctcagatattaaacttcatgtagtctgcaggttatattgaagtaacaaatcgtttcatttttcag

upper sequence: AT1G15080.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os01g49820.2 (Oryza sativa), 5'ss of exon 4
CTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCTGTTGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTTCCCTGACGGTATAGGGgtaagcagcacacatctccttgcttactctta-taaaaccttggataaactctgactggttgaatttctgaaat-tctag--------------------------
 || || ||||| || |  || ||||| ||||| || || || |  ||||||||||| ||||| |||||||||||||| ||||| ||||||||  ||   ||||    |   |      |||  | |||| |  |  |  ||     | |      | |||| || | | |  | | | |                          
TTCAGTTCTTATCACGGCGGTAATAACTGATGCCATTAAAGATGGGGTTGGTCGACCGCGTCCAGATTTCTTTTGGCGCTGTTTTCCTGACGGAGTACCTgtaaatttctagctctcaattggattctctaagcatgattttatcggagccggcctttgttgcatctgtcatgtatgtggaacttatggattttcttggattgcag

upper sequence: AT1G15080.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os08g27030.2 (Oryza sativa), 5'ss of exon 4
CTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCTGTTGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTTCCCTGACGGTATAGGGgtaag----cagcacacatctccttgcttactcttataaaaccttg----gataaac-tctgactggttgaatt-tctgaaattctag------------
 || || |||||||| | ||| || || ||||| || ||| | | ||||||||| || || || |||||||||||||||||||||||||| || |     ||||           | ||     |   |   ||||   ||  |       ||  || | |   ||||| | || | |  | ||||              
TTCGGTGCTTATAACTGCTGTGATTACTGATGCAATTAAGAATGGTGTTGGTCGCCCACGCCCAGATTTCTTTTGGCGTTGTTTCCCTGATGGAAAGCCTgtaatatccttttgtaaattctgatttctctccttaagcaatttcattcctatcgacatgtacttggtttagttctgtttatttcttttttttttacaga

upper sequence: AT1G15080.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G077187_T01 (Zea mays), 5'ss of exon 4
CTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCTGTTGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTTCCCTGACGGTATAGGGgtaagcagcacacatctccttgcttactctt-ataaaaccttggataaa--ctctgactggttgaatttc--tgaaattctag-------------------------------
 || |||||||| || | |||  |||| ||||| |||||||| | |||||| ||||| |||||||||||||| |||||||| |||||||| || | |   ||||  | | |  | ||  | |   |  ||| |||| | ||    | ||  |  ||     ||  ||| |  |  |||| ||                                
TTCAGTACTTATTACTGCTGTTTTAACTGATGCGATAAAGGATGGTGTTGGGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCTgtaa--aactcctaacttttagtcaaaccttgataataactcacttgaagcccttgtgcaattacattgcatttgaattgtataagaaatcttatgaatttacttggcctttag

upper sequence: AT1G15080.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G447433_T08 (Zea mays), 5'ss of exon 6
CTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCTGTTGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTTCCCTGACGGTATAGGGgtaagcagcacacatctccttgcttactcttataaaaccttg---gataaactctgactggttgaatttctgaaattctag----
 || || |||||||| | ||| || || ||||| || ||||| | ||||||||| ||||| || |||||||||||||||||||| ||||| || | |   ||||      |        |   ||    ||  ||   | |    | | |||    |     | |||     |  |  ||     
TTCAGTGCTTATAACTGCTGTGATCACTGATGCAATTAAGGATGGTGTTGGTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaaatccttccatcagtgtcatttttctttgcaagttcatacctgttgaacctgtagccactaaatcagatatttgttatccag

upper sequence: AT1G15080.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 3
CTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCTGTTGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTTCCCTGACGGTATAGGGgtaagcagcaca---catctcct-tgcttactcttat-----aaaaccttggataaactctgactggttgaatttctgaaattctag-------------------------------------
||||||||| || || |  || ||||| ||||| || || || |||||||| ||||||||||| || ||||||||||||||||||||| | || | ||||||  ||    ||   ||||  || |  ||| | || |     | |   |||  |    | |   |  |||   ||    | | |||                                      
CTCTGTACTGATCACGGCAGTTATAACTGATGCAATTAAAGATGCTGTTGGCCGACCTCGTCCAGACTTCTTTTGGCGTTGTTTCCCTAATGGGAAAGGGgtgggctctccattacatcaactatctttatttttgttcccaagattgttgacttctgtttatttttttgttcttgatcagtcctatactcagccaacatatatttggtgcatggattattcag