Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGATGTTGTTTTGCGAATTCTTCTGTATCACAGGCTGGCTTTGTGTAGCATTGGCTCAGgttttttgtctaaactacttgtcgtttgtccttttgctgacttgtcacaatttatttatattatccttttattaatttctgtgttttcttaaaaaaatatttttattttaatattttgaag

Basic information

species Arabidopsis thaliana
transcript AT1G08930.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125021414|gb|EL093683.1|EL093683
EST:     TTTGCGAATTCTTCTGTATCACAGGCTGGCTTTGTGTAGCATTGGCTCAG                         AATGCAATGTG
genomic: TTTGCGAATTCTTCTGTATCACAGGCTGGCTTTGTGTAGCATTGGCTCAGgttttttgtc ... tattttgaagAATGCAATGTG
EST: gi|124825398|gb|EH910264.1|EH910264
EST:     TGGCTTTGTGTAGCATTGGCTCAG                         AATGCAATGTGGCTGGACTGTGGAAGATTGTTACTTGGAATCGGCGTTGGT
genomic: TGGCTTTGTGTAGCATTGGCTCAGgttttttgtc ... tattttgaagAATGCAATGTGGCTGGACTGTGGAAGATTGTTACTTGGAATCGGCGTTGGT
EST: gi|124910899|gb|EH984979.1|EH984979
EST:     CGAATTCTTCTGTATCACAGGCTGGCTTTGTGTAGCATTGGCTCAG                         AATGCAATGTGGCTGGACTGTGGAAGATTGTTACTTGGAATCGGCGTT
genomic: CGAATTCTTCTGTATCACAGGCTGGCTTTGTGTAGCATTGGCTCAGgttttttgtc ... tattttgaagAATGCAATGTGGCTGGACTGTGGAAGATTGTTACTTGGAATCGGCGTT