Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctggctacagctaatattccattgttcttctttacatccgttttgattttggataggttttagtagtctatttcttttgtcaatgtctttttgatacaatgccaatcctttatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgctttactttacacag

Basic information

species Arabidopsis thaliana
transcript AT1G08360.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os02g21660.1 (Oryza sativa), 5'ss of exon 4
CTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctggctacagctaatattccattgttcttctttacatccgttttgattttggataggttttagtagtctatttcttt-tgtcaatgtctttttgatacaatgccaatcctttatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgctttactttacacag
|| || |||||||||||||||||||| ||||||||| | || |||||| || |||| |||||||||||||| ||||||||||||||||||||||| ||||||||||   ||||    |   ||||||||  ||     ||   | |  |  | || |  |||| | ||| ||     ||   |  | ||| || |||||   |  |                                                                             
CTAGTTAAGAAGCTTGCAAAGAAATATCATGCTTTCCTTGCTTCTGAGGCTATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagt---ggctttttcct-tattccatcttttccacttggtttcagt--ggttgtatatagctgttattaactagttgagtggtttcagtgccttttctgttga-----------------------------------------------------------------------------

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os01g64090.1 (Oryza sativa), 5'ss of exon 4
CTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagt-tctggctacagctaatattccattgttcttctttacatccgttttga-ttttggataggttttagtagtctattt-cttttgtcaatgtctttttgatacaatgccaatcctttatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgctttactttacacag
|| || |||||||||||||||||||| || |||||| | || |||||| |  ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||| | | || ||| |   | |   |  |   |    |  |  |||| || | |  |    |    ||     |  ||| ||   || | || |                                                                                    
CTGGTTAAGAAGCTTGCAAAGAAATATCACGCTTTCCTTGCATCTGAGGCCATCATTAAGCAGATTCCTCGACTTCTTGGACCTGGTCTTAACAAGGCAGgcaagtatcttgttccatctattgcactaccatgatagct---gttggacttgagttgttggcaatcatagacagctggctaacttctgctgatatgttctca----------------------------------------------------------------------------------

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G023748_T02 (Zea mays), 5'ss of exon 4
CTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctggctacagctaatattccattgttcttctttacatccgttttgattttggataggttttagtagtctatttcttttg---tcaatgtctttttgatacaatgccaatcctttatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgctttactttacacag
|| || |||||||| |||||||| |||||||||||| | || |||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||  |             | |||| ||  | | ||||   ||  | | |  | | | || |||   ||  | ||||    ||    || |  | | | ||     |||                                                                          
CTAGTGAAGAAGCTGGCAAAGAAGTACCATGCTTTCCTTGCATCTGAGGCTATCATTAAGCAAATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaaggacc------------tcttccttttctgtactttgggtcaatatagtctgttgttatgttactgttttttattgagcttaacctctacatttatctgtgtagatgt-------------------------------------------------------------------------

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G35450.2 (Glycine max), 5'ss of exon 4
CTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctggctacagctaatattccattgttcttc-tttacatccgttttg-attttggataggttttagtagtctatttcttttgtcaatgtctttttgatacaatgccaatcctttatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgctttactttacacag
 | || |||||||| || || |||||||||||||| || || |||||  | |||||||||||||||||||||||| | ||||||||||| ||||| ||||||| ||  || |   || ||   ||   | |||     |||  |||  ||||| |     |||   |||| ||  | |  ||  ||| |     || || |                                                                                   
TTGGTGAAGAAGCTAGCTAAAAAATACCATGCTTTTTTAGCATCTGAAGCAGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGgcatgtattg-ccgtagttatgtttttctggtttaggattttgatcttttttggacaaatgatgttttttggtgatttgctttattttttttaatcattat-----------------------------------------------------------------------------------

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G02970.1 (Glycine max), 5'ss of exon 2
CTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctggctacagctaatattccattgttcttctttacatccgttttgattttggataggttttagtagtctatttct-tttgtcaatgtctttttgatacaatgccaatcctttatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgctttactttacacag
 | || ||||| || || || || |||||||| || || || |||||  | |||||||||||||||||||||||| | ||||||||||| ||||||||||||| ||  || ||        | || |  | ||    |||  |    ||  ||     || || |||| ||  | |  |||| ||| |  |  || |||| | |  |                                                                            
TTGGTGAAGAAACTAGCTAAAAAGTACCATGCCTTTTTAGCTTCTGAAGCAGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGgcatgtattgcctt-------tttttcggttttggattttgaactt-ttcggacaaatgagagtttttggtgatttgcttctgtttttttaaatcatttttacatgaa---------------------------------------------------------------------------

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G31040.2 (Glycine max), 5'ss of exon 3
CTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctggctacagctaatattccattgttcttctttacatccgttttgattttggataggttttagtagtctatttcttttgtcaatgtctttttgatacaatgccaatcctttatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgctttactttacacag
 | || || || || || || ||||| ||||| || |||||||||||  | ||||| |||||||||||||||||  | || |||||||| ||||||||||||| ||| |                   || |   | || |    |||    ||||| || ||   || ||  | |   | |||||  ||  ||   | | | || |||      |                                                                  
TTGGTGAAAAAACTAGCCAAAAAATATCATGCCTTTTTGGCCTCTGAAGCAGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta---------------ttgttttggattttgaatctcgtagacattttagagagtacttggtgatttgcctgttttgataacttcacatcggt-cattgctgtgttt------------------------------------------------------------------

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G39270.2 (Glycine max), 5'ss of exon 3
CTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctggctacagctaatattccattgttcttctttacatccgttttgattttggataggttttagtagtctatttcttttgtcaatgtctttttgatacaatgccaatcctttatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgctttactttacacag
 | || || || || || || ||||| ||||| || || ||||||||  | ||||| |||||||||||||||||  | || |||||||| ||||||||||||| ||| |   |       || ||  ||   |||| |  ||||          ||| || ||   || ||  | |  || ||||   ||  |    | | | || |||                                                                         
TTGGTGAAAAAACTAGCCAAAAAATATCATGCCTTTTTAGCCTCTGAAGCAGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta-ttgttttggattttgaatc--tcttttggacat----------tttagagagaacttggtgatttgcttgttttaataac-ttacatcggt-cattgctgtgtt-------------------------------------------------------------------

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G37980.2 (Glycine max), 5'ss of exon 4
CTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctggctacagctaatattccattgttcttctttacatccgttttgattttggataggttttagtagtctatttcttttgtcaatgtctttttgatacaatgccaatcctttatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgctttactttacacag
|| || ||||||||||| |||||||| |||| |||  | || |||||  | ||||| ||||| |||||||||||| | || |||||| | || ||||||||||||||  |  | |   |  ||||    || |||| |||   || |  |  | | ||  |  ||| |   |  | | |  | |    ||      |     | || || |                                                                       
CTTGTGAAGAAGCTTGCCAAGAAATATCATGTTTTTCTAGCTTCTGAAGCAGTCATCAAGCAAATTCCTCGTCTTTTGGGGCCTGGTTTAAATAAGGCAGgcaagtt--gattgcc-ttgctatt----tgctcttgtttggttctgcgtaaaatatg--tgagttctca-aaccaaataatgtcaataagagaaataccgcagaa-gcta-----------------------------------------------------------------------

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 6
CTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctggctacagctaatattccattgttcttctttacatccgttttgattttggataggt-tttagtagtctatttcttttgtcaatgtctttttgatacaatgccaatcctttatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgctttactttacacag
    ||||||| ||||| |||||||||||||| || || || || ||| |||| ||||||||||| || |||||| | || ||||| || ||||||||||||||||      ||    ||     ||  |||| ||  ||||      ||  | ||   ||  |   ||| | |   || |    | |  |||| | |     || |                                                                            
----TCAAGAAACTTGCCAAGAAATACCATGCCTTTTTAGCATCAGAGGCTGTTATTAAGCAGATCCCCCGTCTTTTAGGCCCTGGGCTCAACAAGGCAGGCAAgtatatcatatgattatggcacc--tgttgttagttactataacttgcaattaatatgagcgcttatttggtcatgttagatat-gatgtatgtggaggacta----------------------------------------------------------------------------

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv08s0007g03340.t01 (Vitis vinifera), 5'ss of exon 4
CTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctggctacagctaatattccattgttcttctttacatccgttttgattttggataggttttagtagtctatttcttttgtcaatgtctttttgatacaatgccaatcctttatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgctttactttacacag
|| |||||||||||||| ||||| |||||||||||  | || |||||  ||||||| |||||||| ||||||||| | || |||||||| ||||||||||||||||  ||      || |  | |   |||  | | || |     ||| |||||   | ||   ||||| ||| ||| |    | | |  ||      |||  | ||                                                                          
CTGGTCAAGAAGCTTGCCAAGAAGTACCATGCTTTTCTTGCATCTGAAGCTGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtgttacttgccatgagttagttgcccat-ttcattattgttatgatt---gttaacctttagcagt-tatattaaatcttagagtg-----gatgtattgtt------------------------------------------------------------------------

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EDP07503 (Chlamydomonas reinhardtii), 5'ss of exon 3
CTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctggctacagctaatattccattgttcttctttacatccgttttgattttggataggttttagtagtctatttcttttgtcaatgtctttttgatacaatgccaatcctt-tatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgctttactttacacag
                                          || || || ||||| ||||||||||| ||||| || || || ||||| |||||||| |||||||||   || |  |||  |   ||     ||     | ||       | |    || |       | |      ||   ||| ||  |      ||  ||   | ||  |    |   |||     | |  || |  || | |   || | | |                         
-----------------------------------------TTCGGACTCCGTCATCAAGCAGATTCCCCGTCTGCTGGGCCCCGGTCTGAACAAGGCCGGCAAGTTCC--CTGCTCCTATCA--ACAAGAACCTGGAGGAGAT-------Ggtgagcgacaaac----gcaacgcccttgggttggcaggga-----tgggacgggggcaggcagggtgggctgctcactga--ctgcagtggtaagggttgaattatggca--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86024375|gb|DR320128.1|DR320128
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|86024361|gb|DR320114.1|DR320114
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|164217555|gb|ES071606.1|ES071606
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGG
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGG
EST: gi|86076176|gb|DR371933.1|DR371933
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|86024382|gb|DR320135.1|DR320135
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCCACCAGGAATCCTTGGGAGTCAAAGGT
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCC-ACCAGGAATCCTTGG-AGTCAAAGGT
EST: gi|86024351|gb|DR320104.1|DR320104
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGGAGTCAAAGGTG
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGG-AGTCAAAGGTG
EST: gi|86024395|gb|DR320148.1|DR320148
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCMTGGTCTTAACAAGGCAG                         GGAAATTCCCAACTCTTGTGAGCCACCA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCA
EST: gi|86024388|gb|DR320141.1|DR320141
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGG
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGG
EST: gi|86024358|gb|DR320111.1|DR320111
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|86024385|gb|DR320138.1|DR320138
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|86024390|gb|DR320143.1|DR320143
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|116467999|gb|EG510591.1|EG510591
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|86024370|gb|DR320123.1|DR320123
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTG
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTG
EST: gi|164232150|gb|ES150188.1|ES150188
EST:     GCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         G-AAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: GCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|86024371|gb|DR320124.1|DR320124
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|124988426|gb|EL060812.1|EL060812
EST:     ATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: ATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|164135179|gb|ES116766.1|ES116766
EST:     GTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGG
genomic: GTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCA-Ggcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGG
EST: gi|164132039|gb|ES211536.1|ES211536
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGG
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGG
EST: gi|86024374|gb|DR320127.1|DR320127
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTG
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTG
EST: gi|164078578|gb|ES113644.1|ES113644
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         G-AAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|124812939|gb|EH897805.1|EH897805
EST:     CGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTG
genomic: CGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTG
EST: gi|86024393|gb|DR320146.1|DR320146
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|86024352|gb|DR320105.1|DR320105
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGG
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGG
EST: gi|86024354|gb|DR320107.1|DR320107
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGA
EST: gi|86024350|gb|DR320103.1|DR320103
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGT
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGT
EST: gi|86024383|gb|DR320136.1|DR320136
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|116478416|gb|EG521008.1|EG521008
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|86024389|gb|DR320142.1|DR320142
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCC-AACTCTTGTGAGCC
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCC
EST: gi|86024379|gb|DR320132.1|DR320132
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|86024387|gb|DR320140.1|DR320140
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGT
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGT
EST: gi|86024399|gb|DR320152.1|DR320152
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|86083451|gb|DR379210.1|DR379210
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|86024368|gb|DR320121.1|DR320121
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GATAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTG
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTG
EST: gi|125014084|gb|EL086353.1|EL086353
EST:     TCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAAAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGG
genomic: TCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCA--Ggcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGG
EST: gi|164013252|gb|ES065674.1|ES065674
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAA-TTCCCAACTCTTGTGAGCCACCAGGAATCCTTGG
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGG
EST: gi|86024381|gb|DR320134.1|DR320134
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAG
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAG
EST: gi|86024378|gb|DR320131.1|DR320131
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|86024397|gb|DR320150.1|DR320150
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAA
EST: gi|86024391|gb|DR320144.1|DR320144
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAA
EST: gi|86024367|gb|DR320120.1|DR320120
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|86024355|gb|DR320108.1|DR320108
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTC
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTC
EST: gi|125100957|gb|EL156224.1|EL156224
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTT
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTT
EST: gi|86024392|gb|DR320145.1|DR320145
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCC-AACTCTTGTGAGCCACCAGGAA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAA
EST: gi|86024365|gb|DR320118.1|DR320118
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCA
EST: gi|86024372|gb|DR320125.1|DR320125
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAG
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAG
EST: gi|86024359|gb|DR320112.1|DR320112
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
EST: gi|86024384|gb|DR320137.1|DR320137
EST:     TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCGACTCTTG
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTG
EST: gi|124719015|gb|EH810417.1|EH810417
EST:     TTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG                         GAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA
genomic: TTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctg ... ctttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcaagttctggctacagctaatattccattgttcttctttacatccgttttgattttggataggttttagtagtctatttcttttgtcaatgtctttttgatacaatgccaatcctttatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgctttactttacacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT