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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTAGAGGATGCTGGGTATGCAGTTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGGGAAAAGgtacatcttatttttgcaatctgatattcttacttgtgtgttttgcctcaaaaactggaaaaaaaaaagaacgtttccatacttctagttttgttcatggaagagcaatgcagagttcaatcatgtcttatggatatattgtttcattgtttcag

Basic information

species Arabidopsis thaliana
transcript AT5G58030.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086381|gb|DR382140.1|DR382140
EST:     GGTATGCAGTTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGGGAAAAG                         GGAAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTTCACAGT
genomic: GGTATGCAGTTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGGGAAAAGgtacatctta ... attgtttcagGGAAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTTCACAGT
EST: gi|152033803|gb|BP816492.2|BP816492
EST:     GGTATGCAGTTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGGGAAAAG                         GGAAACAGAAGAGAGACACGGCTTACTGGGAATTCTGTCTTTCGTTCACAG
genomic: GGTATGCAGTTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGGGAAAAGgtacatctta ... attgtttcagGGAAACAGAAGAGAGACACGG-TTACTGGGAATTCTGTCTTTCGTTCACAG
EST: gi|125065814|gb|EL132908.1|EL132908
EST:     TTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGGGAAAAG                         GGAAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTTCACAGT
genomic: TTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGGGAAAAGgtacatctta ... attgtttcagGGAAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTTCACAGT
EST: gi|19874921|gb|AU235752.1|AU235752
EST:     GGTATGCAGTTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGGGAAAAG                         GGAAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTTCACAGT
genomic: GGTATGCAGTTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGGGAAAAGgtacatctta ... attgtttcagGGAAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTTCACAGT
EST: gi|125125224|gb|EL170766.1|EL170766
EST:     CTTCTTTGCAACCGGGAAAAG                         GGAAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTTCACAGT
genomic: CTTCTTTGCAACCGGGAAAAGgtacatctta ... attgtttcagGGAAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTTCACAGT
EST: gi|47829107|gb|CK118791.1|CK118791
EST:     GGTATGCAGTTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGGGAAAAG                         GGAAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTTCACAGT
genomic: GGTATGCAGTTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGGGAAAAGgtacatctta ... attgtttcagGGAAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTTCACAGT
EST: gi|125274325|gb|EL288410.1|EL288410
EST:     GGTATGCAGTTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGGGAAAAG                         GGAAACAGAAGAGAGACACGGTTACTGGGAATT
genomic: GGTATGCAGTTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGGGAAAAGgtacatctta ... attgtttcagGGAAACAGAAGAGAGACACGGTTACTGGGAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTAGAGGATGCTGGGTATGCAGTTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGGGAAAAGgtacatcttatttttgcaatctgatattcttacttgtgtgttttgcctcaaaaactggaaaaaaaaaagaacgtttccatacttctagttttgttcatggaagagcaatgcagagttcaatcatgtcttatggatatattgtttcattgtttcag

- - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - GAGCTT