1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGATGGCCCGTTGATCGTGATTGCATGTGGAAGAGATACTATTTCTATTGCTAGCTCGATAAGACGTTTGGCTTCTGAAAACGTCTTCGTTGTTCAGgtctattataaaatttaacctgtttgttatgttagttattaaggcacagtagactaagctctgaaatacaattcgagacaaactttacttagtatctttg...
species | Arabidopsis thaliana |
transcript | AT5G22350.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGCTAGCTCGATAAGACGTTTGGCTTCTGAAAACGTCTTCGTTGTTCAG ATACAACATCCTAGATCACATTTAAATAGGTTTGACATGGTGATCACGCCTEST: gi|116460255|gb|EG502847.1|EG502847
genomic: TTGCTAGCTCGATAAGACGTTTGGCTTCTGAAAACGTCTTCGTTGTTCAGgtctattata ... cattttgtagATACAACATCCTAGATCACATTTAAATAGGTTTGACATGGTGATCACGCCT
EST: TTGCTAGCTCGATAAGACGTTTGGCTTCTGAAAACGTCTTCGTTGTTCAG ATACAACATCCCTAGATCACATTTAAATAGGTTTGACATGGTGATCACGCCEST: gi|116472246|gb|EG514838.1|EG514838
genomic: TTGCTAGCTCGATAAGACGTTTGGCTTCTGAAAACGTCTTCGTTGTTCAGgtctattata ... cattttgtagATACAACAT-CCTAGATCACATTTAAATAGGTTTGACATGGTGATCACGCC
EST: TTGCTAGCTCGATAAGACGTTTGGCTTCTGAAAACGTCTTCGTTGTTCAG ATACAACATCCTAGATCACATTTAAATAGGTTTGACATGGTGATCACGCCT
genomic: TTGCTAGCTCGATAAGACGTTTGGCTTCTGAAAACGTCTTCGTTGTTCAGgtctattata ... cattttgtagATACAACATCCTAGATCACATTTAAATAGGTTTGACATGGTGATCACGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGGCCCGTTGATCGTGATTGCATGTGGAAGAGATACTATTTCTATTGCTAGCTCGATAAGACGTTTGGCTTCTGAAAACGTCTTCGTTGTTCAGgtctattataaaatttaacctgtttgttatgttagttattaaggcacagtagactaagctctgaaatacaattcgagacaaactttacttagtatctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagacaaa