Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTCTACTACATGGGGCTGAAATATACGTCCCCAACGTTCTCATGCGCCATGAGTAACATGCTTCCGGCCATGACCTTTATCTTGGCTGTACTATTCCGgtacgtaaataaatgtgcaaatctaaattatgtggctttcaactaaaatacgattattgttttctaaacgttacaaatggttttaaatggtaataaattcttctattaattttgataatag

Basic information

species Arabidopsis thaliana
transcript AT5G07050.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G136567_T02 (Zea mays), 5'ss of exon 2
ACTTCTACTACATGGGGCTGAAATATACGTCCCCAACGTTCTCATGCGCCATGAGTAACATGCTTCCGGCCATGACCTTTATCTTGGCTGTACTATTCCGgtacgtaaataaatgtgcaaatctaa--attatgtggctttcaactaaaatacgattattgttttctaaacgttaca-aatggt--tttaaatggtaataaattcttctat-taattttgataatag--------------------------------------------------
|||||||||||  |||||| || |  || || || || ||||| ||||||||||| |||||||| || |||||||||||  || |||| || || ||| ||||  || ||| |   ||| || ||   || |  | ||  |  |   |   |  | ||       | |   |  | | ||||    | ||     ||   ||  | |   |  | || ||  | | |                                                  
ACTTCTACTACGCGGGGCTCAAGTTCACCTCGCCGACCTTCTCCTGCGCCATGAGCAACATGCTCCCCGCCATGACCTTCGTCCTGGCCGTGCTCTTCAGgtatatatatatacacgcatatatactcatgagctagcgctggaacgagcaagaactaagaaacacaagcagcaaaataatgaaagtatagcaaataggcaacacgtacgtacagttgtggcattggtgtggtggataacaaacgaactgattgatataacggatacgtaccgtcag

upper sequence: AT5G07050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA15G36200.1 (Glycine max), 5'ss of exon 3
ACTTCTACTACATGGGGCTGAAATATACGTCCCCAACGTTCTCATGCGCCATGAGTAACATGCTTCCGGCCATGACCTTTATCTTGGCTGTACTATTCCGgtacgtaaataaatgtgcaaatctaaattatgtggctttcaactaaaatacgattattgttttctaaacgttacaaatggttttaaatggtaataaattcttctattaattttgataatag
| ||||||||    ||| ||||    || |||||||| |||||||| || ||||| ||||||||||| |||||||| ||| |  |||| ||  | | ||||||  | ||| ||    |  || |   ||| | ||  |  || |  || |   | |      |  |||   || |  || |||| |    | | ||       ||||||||          
ATTTCTACTATGCTGGGTTGAAGCTCACATCCCCAACCTTCTCATGTGCAATGAGCAACATGCTTCCAGCCATGACTTTTGTGATGGCAGTGTTTTGCCGgtaaattaattaa-acccggatttc--ttaag-ggtctctaattggaaaatactaacacaactaaaaagactaaatgtgttttttatctctcaaaa-------tattaatt----------

upper sequence: AT5G07050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv13s0084g00090.t01 (Vitis vinifera), 5'ss of exon 3
ACTTCTACTACATGGGGCTGAAATATACGTCCCCAACGTTCTCATGCGCCATGAGTAACATGCTTCCGGCCATGACCTTTATCTTGGCTGTACTATTCCGgtacgtaaataaatgtgcaaatctaaattatgtggctttcaactaaaatacgattattgttttctaaacgttacaaatggttttaaatggtaataaattcttctattaattttgataatag----------
|||| || ||    ||  ||||    || ||||| || ||||||||||| ||||| || ||||||||||||||||| ||  || |||| ||  ||||||||||||   || ||| |  | || |||      | |   | | |      |  ||| |  |||||      |     || | |  | ||||   ||| ||  |    |  ||   || || |          
ACTTTTATTATGCTGGTTTGAAGCTGACTTCCCCGACCTTCTCATGCGCAATGAGCAATATGCTTCCGGCCATGACATTCGTCATGGCGGTCATATTCCGgtacgattatcaatctcaatatataatcatcatcgtcatgatcgctgtgatcattttatttttcggggtttggtgtattgatc-acatgg-gctaattttgtaacatgtttgacatgatggaattgaaaag