1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAAgtaaaaacttcattctacatcatttggagatttagtttagtctgtgcgtggtttctgaattagatttgtttgttcttatggtatatag
species | Arabidopsis thaliana |
transcript | AT5G03630.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAA ATAAAGCTACACTTCCGAATTTCTATGTTGCTGCTGGAATTGGGGGAGAGAEST: gi|47828725|gb|CK118409.1|CK118409
genomic: CGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAAgtaaaaactt ... tggtatatagATAAAGCTACACTTCCGAATTTCTATGTTGCTGCTGGAATTGGGGGAGAGA
EST: TCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAA ATAAAGCTACACTTCCGAATTTCTATGTTGCTGCTGGAATTGGGGGAGAGAEST: gi|124844947|gb|EH929384.1|EH929384
genomic: TCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAAgtaaaaactt ... tggtatatagATAAAGCTACACTTCCGAATTTCTATGTTGCTGCTGGAATTGGGGGAGAGA
EST: TATCCACCTCGAAA ATAAAGCTACACTTCCGAATTTCTATGTTGCTGCTGGAATTGGGGGAGAGAEST: gi|125256452|gb|EL270537.1|EL270537
genomic: TATCCACCTCGAAAgtaaaaactt ... tggtatatagATAAAGCTACACTTCCGAATTTCTATGTTGCTGCTGGAATTGGGGGAGAGA
EST: TCCACCTCGAAA ATAAAGCTACACTTCCGAATTTCTATGTTGCTGCTGGAATTGGGGGAGAGAEST: gi|124886509|gb|EH965411.1|EH965411
genomic: TCCACCTCGAAAgtaaaaactt ... tggtatatagATAAAGCTACACTTCCGAATTTCTATGTTGCTGCTGGAATTGGGGGAGAGA
EST: TCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAA ATAAAGCTACACTTCCGAATTTCTAEST: gi|124969885|gb|EL043753.1|EL043753
genomic: TCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAAgtaaaaactt ... tggtatatagATAAAGCTACACTTCCGAATTTCTA
EST: TCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAA ATAAAGCTACACTTCCGAATTTCTAT
genomic: TCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAAgtaaaaactt ... tggtatatagATAAAGCTACACTTCCGAATTTCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAAgtaaaaacttcattctacatcatttggagatttagtttagtctgtgcgtggtttctgaattagatttgtttgttcttatggtatatag
- - - - - - - - - - - - - AGCAAG