1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ACGGAAAATACGTTTCTTCAGGGATCAAATGTCAAAAGCAGGAGTTCCAGCCAAGGAAATGCAAGGGAAAGAAAATGACATTGACTTGGATGATGTTGAGgtaaaaatggggatccatgcttctcatttccatgccatgcttttcgttttctcacggatatacttttttcttccttctggcttgttag
species | Arabidopsis thaliana |
transcript | AT4G39080.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAAGGAAATGCAAGGGAAAGAAAATGACATTGACTTGGATGATGTTGAG GTAAAGCTTGGAGAGCTAGAAGCTGAACTTGTTGAAATCAAEST: gi|116448634|gb|EG491226.1|EG491226
genomic: CCAAGGAAATGCAAGGGAAAGAAAATGACATTGACTTGGATGATGTTGAGgtaaaaatgg ... ggcttgttagGTAAAGCTTGGAGAGCTAGAAGCTGAACTTGTTGAAATCAA
EST: CCAAGGAAATGCAAGGGAAAGAAAATGACATTGACTTGGATGATGTTGAG GTAAAGCTTGGAGAGCTAGAAGCTGAACTTGTTGAAATCAATGCTAATAATEST: gi|301501304|gb|HO206844.1|HO206844
genomic: CCAAGGAAATGCAAGGGAAAGAAAATGACATTGACTTGGATGATGTTGAGgtaaaaatgg ... ggcttgttagGTAAAGCTTGGAGAGCTAGAAGCTGAACTTGTTGAAATCAATGCTAATAAT
EST: CCAAGGAAATGCAAGGGAAAGAAAATGACATTGACTTGGATGATGTTGAG GTAAAGCTTGGAGAGCTAGAAGCTGAACTTGTTGAAATCAATGCTAATAATEST: gi|86064751|gb|DR360508.1|DR360508
genomic: CCAAGGAAATGCAAGGGAAAGAAAATGACATTGACTTGGATGATGTTGAGgtaaaaatgg ... ggcttgttagGTAAAGCTTGGAGAGCTAGAAGCTGAACTTGTTGAAATCAATGCTAATAAT
EST: CCAAGGAAATGCAAGGGAAAGAAAATGACATTGACTTGGATGATGTTGAG GTAAAGCTTGNAGAGCTAGAAGCTGAACTTGTTGAAATCAATGCTAATAATEST: gi|116444120|gb|EG486712.1|EG486712
genomic: CCAAGGAAATGCAAGGGAAAGAAAATGACATTGACTTGGATGATGTTGAGgtaaaaatgg ... ggcttgttagGTAAAGCTTGGAGAGCTAGAAGCTGAACTTGTTGAAATCAATGCTAATAAT
EST: CCAAGGAAATGCAAGGGAAAGAAAATGACATTGACTTGGATGATGTTGAG GTAAAGCTTGGAGAGCTAGAAGCTGAACTTGTTGAAATCAATGCTAATAATEST: gi|116415767|gb|EG458359.1|EG458359
genomic: CCAAGGAAATGCAAGGGAAAGAAAATGACATTGACTTGGATGATGTTGAGgtaaaaatgg ... ggcttgttagGTAAAGCTTGGAGAGCTAGAAGCTGAACTTGTTGAAATCAATGCTAATAAT
EST: CCAAGGAAATGCAAGGGAAAGAAAATGACATTGACTTGGATGATGTTGAG GTAAAGCTTGGAGAGCTAGAAGCTGAACTTGTTGAAATCAATGCTAATAAT
genomic: CCAAGGAAATGCAAGGGAAAGAAAATGACATTGACTTGGATGATGTTGAGgtaaaaatgg ... ggcttgttagGTAAAGCTTGGAGAGCTAGAAGCTGAACTTGTTGAAATCAATGCTAATAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGAAAATACGTTTCTTCAGGGATCAAATGTCAAAAGCAGGAGTTCCAGCCAAGGAAATGCAAGGGAAAGAAAATGACATTGACTTGGATGATGTTGAGgtaaaaatggggatccatgcttctcatttccatgccatgcttttcgttttctcacggatatacttttttcttccttctggcttgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA