Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTGATTCTCAAGTTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATACgtgagtgtcttgattgacgaagctgcatgacttgatacttatgctatcttatatatccggatgatttaataattcgttttcttatgatttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G31300.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G31300.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G08260.1 (Glycine max), 5'ss of exon 3
GCTGCTGATTCTCAAGTTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATACgtgagtgtcttgattgacg-aagctgcatgacttgatactt-atgctatcttatatatccggatgatttaataattc-gttttcttatgatttgcag----------------
||||||||||||||  |||| ||||||||||| ||||||||||||||||| || |||| |||| ||| | | |   | | |   | |  | |   || |  ||||  | ||        |  |  ||| |||     |  || ||| |||                   
GCTGCTGATTCTCAGATTGTCTCTGACTATGTGCGCTACTTCCTTCACCAACACACgtaagtgactttactaaaatatgatttttaaggtaaagttttagactatgatttagtgtgtacttttacaatgattttacctcattgtgagttgtgagtttgtatttgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125233186|gb|EL247271.1|EL247271
EST:     TTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATAC                         AATTCAGCATGGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATCAG
genomic: TTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATACgtgagtgtct ... tgatttgcagAATTCAGCATGGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATCAG
EST: gi|116424148|gb|EG466740.1|EG466740
EST:     GATTCTCAAGTTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATAC                         AATTCAGCATGGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATCAG
genomic: GATTCTCAAGTTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATACgtgagtgtct ... tgatttgcagAATTCAGCATGGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATCAG
EST: gi|124749106|gb|EH839236.1|EH839236
EST:     TTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATAC                         AATTCAGCATGGACAACCCGCAACTGTTAAAGGTTTCTGCCAACCTTATCA
genomic: TTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATACgtgagtgtct ... tgatttgcagAATTCAGCATGGACAACCCGCAACTGTTAA-GGTTTCTGCCAACCTTATCA
EST: gi|164123245|gb|ES088084.1|ES088084
EST:     GATTCTCAAGTTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATAC                         AATTCAGCATGGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATC
genomic: GATTCTCAAGTTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATACgtgagtgtct ... tgatttgcagAATTCAGCATGGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATC
EST: gi|116444628|gb|EG487220.1|EG487220
EST:     GATTCTCAAGTTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATAC                         AATTCAGCATGGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATCAG
genomic: GATTCTCAAGTTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATACgtgagtgtct ... tgatttgcagAATTCAGCATGGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATCAG
EST: gi|47831542|gb|CK121226.1|CK121226
EST:     GATTCTCAAGTTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATAC                         AATTCAGCATGGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATCAG
genomic: GATTCTCAAGTTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATACgtgagtgtct ... tgatttgcagAATTCAGCATGGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATCAG
EST: gi|116444625|gb|EG487217.1|EG487217
EST:     GATTCTCAAGTTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATAC                         AATTCAGCATGGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATCAG
genomic: GATTCTCAAGTTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATACgtgagtgtct ... tgatttgcagAATTCAGCATGGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATCAG
EST: gi|124993909|gb|EL066178.1|EL066178
EST:     CTATGTCCGCTACTTCCTTCACCAGCATAC                         AATTCAGCATGGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATCAG
genomic: CTATGTCCGCTACTTCCTTCACCAGCATACgtgagtgtct ... tgatttgcagAATTCAGCATGGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATCAG