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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAACAGCAATAACGGAACGGGCAAGGCACGAATGCGTTGGACGCCAGAGCTTCACGAGGCTTTTGTTGAGGCTGTCAACAGTCTTGGCGGTAGTGAAAgtgagcatttatttctctttgctttccataaactttgaattgtatatggaaagataataactttttctttatattttactcag

Basic information

species Arabidopsis thaliana
transcript AT4G28610.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G28610.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G04540.1 (Glycine max), 5'ss of exon 4
TCAAACAGCAA-TAACGGAACGGGCAAGGCACGAATGCGTTGGACGCCAGAGCTTCACGAGGCTTTTGTTGAGGCTGTCAACAGTCTTGGCGGTAGTGAAAgtgag--catttatttctctttgctttccataaactttgaattgtatatggaaagataataactttttctttatattttactcag--------------
     |||||| |   |   | |  ||| |||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||||   ||||| || |||||||||| |  ||| | ||| || |   |||   |||    | |    ||  | |  ||    |  | || | ||      ||  || |              
-TCCTCAGCAAATTCTGCTCCTGCTAAGTCACGAATGCGTTGGACACCAGAACTTCATGAGGCGTTTGTGGAGGCTGTCAACCAACTTGGGGGGAGTGAAAgtgcggtcatctttttttcctctgtttgt-taagtccttagccttagtttgctagcctctgtccttattttcccccctttttctgtcttctttctacag

upper sequence: AT4G28610.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G18800.1 (Glycine max), 5'ss of exon 1
TCAAACAGCAATAACGGAACGGGCAAGGCACGAATGCGTTGGACGCCAGAGCTTCACGAGGCTTTTGTTGAGGCTGTCAACAGTCTTGGCGGTAGTGAAAgtgagcatttatttctctttgctttccataaactttgaattgtatatggaaagataataactttttctttatattttactcag--------------
                        ||| |||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||||   ||||| || |||||||||  |    | ||| ||| |   ||   |||    | |    ||  | |  |     |  | |  | ||    | ||  || |              
-----------------------TAAGTCACGAATGCGTTGGACACCAGAACTTCATGAGGCGTTTGTGGAGGCTGTCAACCAACTTGGGGGGAGTGAAAgtacggtgatctttttctctctgtttgttaagtccttagccttagtttgctaacctttgtcctcattttcccctgtttttctgtctgctttctacag

upper sequence: AT4G28610.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G32350.1 (Glycine max), 5'ss of exon 4
TCAAACAGCAA-TAACGGAACGGGCAAGGCACGAATGCGTTGGACGCCAGAGCTTCACGAGGCTTTTGTTGAGGCTGTCAACAGTCTTGGCGGTAGTGAAAgtgagcatttatttctctttgctttccataaactttgaattgtatatggaaagataataac-tttttctttatattttactcag--
     |||||| |   | | | | |||| |||| ||||| ||||| || |||||||| ||||| ||||| ||||||||||||   ||||| || |||||||||  |  | | ||||||| |  |      ||    | | ||   ||        |       ||||||   || || |  | |   
-TCCTCAGCAAATTCTGCACCTGCCAAGCCACGGATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAgtatgtctatctttctctcttttcaaagcaaggccttagtttcttaaacttctgtctccttatttttccccattttctttttacag

upper sequence: AT4G28610.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G35080.1 (Glycine max), 5'ss of exon 4
TCAAACAGCAATAACGGAACGGGCAAGGCACGAATGCGTTGGACGCCAGAGCTTCACGAGGCTTTTGTTGAGGCTGTCAACAGTCTTGGCGGTAGTGAAAgtgag--catttatttctctttgctttccataaactttgaattgtatatggaaagataataactttttctttatattttact-cag
||    |  |||   | | | | |||| |||| ||||| ||||| || |||||||| ||||| ||||| ||||||||||||   ||||| || |||||||||  |   || | | ||||||| |  | ||    ||| |  |  || |        |  | | |||| |    ||| ||  | |||
TCCTCAACAAATTCTGCACCTGCCAAGCCACGGATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAgtatgtctatctttctctcttttcaatgcaaggccttagtttcttaaacttctgcctccttatttttccccattatctttttacag

upper sequence: AT4G28610.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv07s0005g04120.t01 (Vitis vinifera), 5'ss of exon 3
TCAAACAGCAATAACGGAACGGGCAAGGCACGAATGCGTTGGACGCCAGAGCTTCACGAGGCTTTTGTTGAGGCTGTCAACAGTCTTGGCGGTAGTGAAAgtgagcatttatttct-ctttgctttcca--taaac----tttgaattgtata-tggaaagataataactttttct-ttatattttactcag
||       || |  |   |   |||| |||| ||||||||||| ||||| ||||| ||||||||||| ||||| ||||||   ||||| ||||||||||||| | |    |     | || |||| |   | |||    |||| |   || | |   ||| |  || ||||   | || |||| ||  |||
TCGTCAGTAAACACTGCTCCAACCAAGCCACGGATGCGTTGGACACCAGAACTTCATGAGGCTTTTGTGGAGGCAGTCAACCAACTTGGTGGTAGTGAAAgtgtgtacccctcctagccttactttactgtttaaccttatttggacaatacaattataaggtcctagctttaattgttttattataaacag