1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGTTGTACAGCTGGCTCAGACCACAATGCGTAGTGAGCTTGGTAAGATCACTCTTGATAAGACCTTTGAGGAACGAGACACTCTCAACGAGAAGATAGTGgtttgttctccagccttctttatctctgttttgaagtgttaggactcaccgtacttaagctcctgtgcatttcaaagaatttagaatccgctaagttgat...
species | Arabidopsis thaliana |
transcript | AT4G27585.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGACACTCTCAACGAGAAGATAGTG GAAGCCATCAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTATEST: gi|124858717|gb|EH943154.1|EH943154
genomic: AGACACTCTCAACGAGAAGATAGTGgtttgttctc ... attcttgcagGAAGCCATCAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTAT
EST: CTCTTGATAAGACCTTTGAGGAACGAGACACTCTCAACGAGAAGATAGTG GAAGCCATCAATGTTGCTGCAAAAGACTGGGGEST: gi|164166474|gb|ES194042.1|ES194042
genomic: CTCTTGATAAGACCTTTGAGGAACGAGACACTCTCAACGAGAAGATAGTGgtttgttctc ... attcttgcagGAAGCCATCAATGTTGCTGCAAAAGACTGGGG
EST: AGACACTCTCAACGAGAAGATAGTG GTAAGTCCATCAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTEST: gi|125264693|gb|EL278778.1|EL278778
genomic: AGACACTCTCAACGAGAAGATAGTGgtttgttctc ... attcttgcagG-AAG-CCATCAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTT
EST: CAACGAGAAGGTAGTG GAAGCCATCAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTAT
genomic: CAACGAGAAGATAGTGgtttgttctc ... attcttgcagGAAGCCATCAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGTACAGCTGGCTCAGACCACAATGCGTAGTGAGCTTGGTAAGATCACTCTTGATAAGACCTTTGAGGAACGAGACACTCTCAACGAGAAGATAGTGgtttgttctccagccttctttatctctgttttgaagtgttaggactcaccgtacttaagctcctgtgcatttcaaagaatttagaatccgctaagttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaagaat