1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CATGAATATCAACGGCTTGGAGGCTATGTTATTCATCGGAATAAATGCAGCTATAAGgtatcatcactatctgaccttttttcctgttattcaggtaactagtaaactcatgtgtatatttgtgtactattag
species | Arabidopsis thaliana |
transcript | AT4G25640.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCAGCTATAAG TGTCCGTGTATCCAATGAGCTTGGCCTAGGCCGTCCACGAGCAGCTAAGTAEST: gi|124814367|gb|EH899233.1|EH899233
genomic: TGCAGCTATAAGgtatcatcac ... gtactattagTGTCCGTGTATCCAATGAGCTTGGCCTAGGCCGTCCACGAGCAGCTAAGTA
EST: TCTAACGGCTTGGAGGCTATGTTATTCATCGGAATAAATGCAGCTATAAG TGTCCGTGTATCCAATGAGCTTGG
genomic: TC-AACGGCTTGGAGGCTATGTTATTCATCGGAATAAATGCAGCTATAAGgtatcatcac ... gtactattagTGTCCGTGTATCCAATGAGCTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGAATATCAACGGCTTGGAGGCTATGTTATTCATCGGAATAAATGCAGCTATAAGgtatcatcactatctgaccttttttcctgttattcaggtaactagtaaactcatgtgtatatttgtgtactattag
- - - - - - - - TTGGAG
- - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - GCAGCT