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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGAGATTACGCCTTAGAGATGTGGAGGCTCCTTGATCCAGAAGGGAATTTGATAAACACAAATGACTTGCTTGCTCGCATCGTTTGTGTGAAATCTGgtatactttttggtatcttatacctgcttatatttcatcatggtaaaacttcttacaagcttgtaattaaccaccacag

Basic information

species Arabidopsis thaliana
transcript AT4G21670.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G21670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os02g42600.1 (Oryza sativa), 5'ss of exon 3
GAAAGAGATTACGCCTTAGAGATGTGGAGGCTCCTTGATCCAGAAGGGAATTTGATAAACACAAATGACTTGCTTGCTCGCATCGTTTGTGTGAAATCTGgtatac------tttttggtatcttatacct---gctta-tatttcatcatggtaaaacttcttacaagcttgtaattaaccaccacag--------------------------------------------------------------------------------
|| ||||| ||||||||||| ||||||||| | |||||||||||    |  ||||| ||| |   | |  |   ||   | || || ||||| |||||||||||        ||| || |    |||  |     |||| ||     |  |  | |||  |   ||||         |   ||  |  |                                                                                
GAGAGAGACTACGCCTTAGAAATGTGGAGGTTGCTTGATCCAGACTCAAGATTGATTAACTCTGTTCAACTTAATGACAGAATGGTGTGTGTAAAATCTGgtatgtgtctcttttctgattaagtatgtcatgaacttagtacaatgttgttttcaaatgttccacaattagagctctggtcatgattgcagcttcaatgcttccatcaccctttatgcatattgtttgatccatcctactgaagctaacagcgactttttttttctag

upper sequence: AT4G21670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G31510.1 (Glycine max), 5'ss of exon 3
GAAAGAGATTACGCCTTAGAGATGTGGAGGCTCCTTGATCCAGAAGGGAATTTGATAAACACAAATGACTTGCTTGCTCGCATCGTTTGTGTGAAATCTGgta-----tactttttggtatcttatacctgcttatatttcatcatggtaaaactt---cttacaagcttgtaattaaccaccacag-------------
|| || || || ||  |||| ||||||||||| ||||||||||||  ||||||||||||  | || ||  |||| | ||| || |||||||| || || ||||      | ||||| | | | |  |  |   | | |||    |||  ||   ||     |  ||    |||  |||      ||              
GAGAGGGACTATGCACTAGAAATGTGGAGGCTTCTTGATCCAGAATTGAATTTGATAAATTCGAAAGAACTGCTAGATCGTATTGTTTGTGTCAAGTCAGgtaagtggcatttttttgaaacattcaattatctttgttttcaaatgagaagctttacatgtgtaatggagtagataaaggaagcaaattaaaaggatga

upper sequence: AT4G21670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA15G07800.1 (Glycine max), 5'ss of exon 3
GAAAGAGATTACGCCTTAGAGATGTGGAGGCTCCTTGATCCAGAAGGGAATTTGATAAACACAAATGACTTGCTTGCTCGCATCGTTTGTGTGAAATCTGgtatactttttggtatcttatacctgcttatatttcatcatggtaaaacttcttacaagcttgtaattaaccac-cacag-------------------------------------------------------------------------------------------------------------------
|| || || || ||  |||| ||||||||||| ||||||||||||  ||||||||||||  | || ||  || | | ||| || |||||||| || |||||||       |  | |   |   ||  |    ||   |     | | |    ||||| |  ||||||| |  |   | ||                                                                                                                   
GAGAGGGACTATGCACTAGAAATGTGGAGGCTTCTTGATCCAGAATTGAATTTGATAAATTCGAAAGAACTGTTAGATCGTATTGTTTGTGTCAAGTCTGgtaagtggcatttttttaaaattctattatccttgttttcaaatgagaagctttacatg--tgtaattgagtagataaagggagcaaataaaaaggatgacaatagcttgtattttaaattttaaaattcataccagtttttctgctgcaactgttcatttattttttgtgtttatgtgtttcaatatataatag