1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAAAGTAGAAGCGAGAAGAAAAGCCGAAAGGCGATGCTGAAACTCGGAATGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAATgtaagtaatgacctaattgactgtattccattattgtgtagcgatgtttgattctgtatgttattgtatcatttag
species | Arabidopsis thaliana |
transcript | AT4G10480.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAAT GTGTTGTTTGTCATCTCGAAGCCGGATGEST: gi|125301050|gb|EL315135.1|EL315135
genomic: TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAATgtaagtaatg ... tatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATG
EST: TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAAT GTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACEST: gi|164048330|gb|ES215676.1|ES215676
genomic: TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAATgtaagtaatg ... tatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAAC
EST: CTATCAAGAGATCAAAGAATT GTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAEST: gi|86075631|gb|DR371388.1|DR371388
genomic: CTATCAAGAGATCAAAGAA-Tgtaagtaatg ... tatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGA
EST: GAGATCAAAGAAT GTGTTGTTTGTCATCTCGAASCCGGATGTGTTCAAGAGTCCGAACTCTGAGEST: gi|116479994|gb|EG522586.1|EG522586
genomic: GAGATCAAAGAATgtaagtaatg ... tatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAG
EST: TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAAT GTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAGEST: gi|86078942|gb|DR374699.1|DR374699
genomic: TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAATgtaagtaatg ... tatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAG
EST: TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAAT GTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAGEST: gi|125001938|gb|EL074207.1|EL074207
genomic: TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAATgtaagtaatg ... tatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAG
EST: AGTGACTATCAAGAGATCAAAGAAT GTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAG
genomic: AGTGACTATCAAGAGATCAAAGAATgtaagtaatg ... tatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAAGTAGAAGCGAGAAGAAAAGCCGAAAGGCGATGCTGAAACTCGGAATGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAATgtaagtaatgacctaattgactgtattccattattgtgtagcgatgtttgattctgtatgttattgtatcatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA