1 5' 3' | 2 5' 3' | 3 5' 3' |
GAGTGAGGAACTTCAATCCCAAGCTTGGTCTGAATCCATCCGTTTTAAAGCAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAAgtatgtttttgtttccttcatgttctatttctactttatctacttattaatgttggatttatggtttttcttttagtctctttggtaactttgacttgttttgtgatcttttgttctgcag
species | Arabidopsis thaliana |
transcript | AT4G01770.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAA GTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTACEST: gi|116377409|gb|EG420001.1|EG420001
genomic: CAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAAgtatgttttt ... tgttctgcagGTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTAC
EST: CAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAA GTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTACEST: gi|116377428|gb|EG420020.1|EG420020
genomic: CAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAAgtatgttttt ... tgttctgcagGTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTAC
EST: CAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAA GTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTACEST: gi|116384206|gb|EG426798.1|EG426798
genomic: CAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAAgtatgttttt ... tgttctgcagGTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTAC
EST: CAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAA GTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTACEST: gi|116378074|gb|EG420666.1|EG420666
genomic: CAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAAgtatgttttt ... tgttctgcagGTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTAC
EST: CAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAA GTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTACEST: gi|116377437|gb|EG420029.1|EG420029
genomic: CAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAAgtatgttttt ... tgttctgcagGTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTAC
EST: CAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAA GTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTAC
genomic: CAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAAgtatgttttt ... tgttctgcagGTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGAGGAACTTCAATCCCAAGCTTGGTCTGAATCCATCCGTTTTAAAGCAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAAgtatgtttttgtttccttcatgttctatttctactttatctacttattaatgttggatttatggtttttcttttagtctctttggtaactttgacttgttttgtgatcttttgttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA