1 5' 3' | 2 5' 3' | 3 5' 3' |
GTCTCTCGTCTCTCCCTTATGCTTTCTCCTATTCCTGCTGTTGCCCTCACCCGTGACCGTGCCACCGATGCTGCCAACATGAGAAAACTTCTCGAGAAAGgtactttacacatcttctcatcatatattactagagcatacctataacaagtttcactgtccagggggttcaataggagtttctatttctttctttttat...
species | Arabidopsis thaliana |
transcript | AT4G00400.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGTGACCGTGCCACCGATGCTGCCAACATGAGAAAACTTCTCGAGAAAG GCGACTTGGTGATATGTCCEST: gi|125127193|gb|EL172166.1|EL172166
genomic: CCGTGACCGTGCCACCGATGCTGCCAACATGAGAAAACTTCTCGAGAAAGgtactttaca ... tgtataacagGCGACTTGGTGATATGTCC
EST: CCGTGACCGTGCCACCGATGCTGCCAACATGAGAAAACTTCTCGAGAAAG GCGACTTGGTGATATGTCCGGAAGGCACGACGEST: gi|164194617|gb|EL987122.1|EL987122
genomic: CCGTGACCGTGCCACCGATGCTGCCAACATGAGAAAACTTCTCGAGAAAGgtactttaca ... tgtataacagGCGACTTGGTGATATGTCCGGAAGGCACGACG
EST: CCGTGACCGTGCCACCGATGCTGCCAACATGAGAAAACTTCTCGAGAAAG GCGACTTGGTGATATGTCCGGAAGGCACGACGTGTAGAGAAGAGTAEST: gi|125314116|gb|EL328201.1|EL328201
genomic: CCGTGACCGTGCCACCGATGCTGCCAACATGAGAAAACTTCTCGAGAAAGgtactttaca ... tgtataacagGCGACTTGGTGATATGTCCGGAAGGCACGACGTGTAGAGAAGAGTA
EST: CCGTGACCGTGCCACCGATGCTGCCAACATGAGAAAACTTCTCGAGAAAG GCGACTTGGTGAEST: gi|164052983|gb|EL990695.1|EL990695
genomic: CCGTGACCGTGCCACCGATGCTGCCAACATGAGAAAACTTCTCGAGAAAGgtactttaca ... tgtataacagGCGACTTGGTGA
EST: CCGTGACCGTGCCACCGATGCTGCCAACATGNGAAAACTTCTCGAGAAAG GCGACTTGGTGATATGTCCGGAAGGCACGACGTGTAGAGAAGAGTA
genomic: CCGTGACCGTGCCACCGATGCTGCCAACATGAGAAAACTTCTCGAGAAAGgtactttaca ... tgtataacagGCGACTTGGTGATATGTCCGGAAGGCACGACGTGTAGAGAAGAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTCTCGTCTCTCCCTTATGCTTTCTCCTATTCCTGCTGTTGCCCTCACCCGTGACCGTGCCACCGATGCTGCCAACATGAGAAAACTTCTCGAGAAAGgtactttacacatcttctcatcatatattactagagcatacctataacaagtttcactgtccagggggttcaataggagtttctatttctttctttttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctttctt