1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGTTCAAGAATTTGGATAAGTTAGTGACTGATTTGCAGAGTGAGATTATCGATAAGCTTGATGGAAAACCAAAACCTGTTGCTTCGAGAGCACAGTCCAGgtaatttcccttattaagcaccaagaatttgatgcctcttagtgtttgatcattgggacttgcaacgaacatatgattgtagcttgtattgtcactgaac...
species | Arabidopsis thaliana |
transcript | AT3G53970.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATAAGCTTGATGGAAAACCAAAACCTGTTGCTTCGAGAGCACAGTCCAG CTCTGAGACTAATGAAGAGCCTAGATATTACGATGATACGCCTAATCCATTEST: gi|124982678|gb|EL055466.1|EL055466
genomic: GATAAGCTTGATGGAAAACCAAAACCTGTTGCTTCGAGAGCACAGTCCAGgtaatttccc ... ttgcttgcagCTCTGAGACTAATGAAGAGCCTAGATATTACGATGATACGCCTAATCCATT
EST: CTTGATGG-AAACCAAAACCTGTTGCTTCGAGAGCACAGTCCAG CTCTGAGACTAATGAAGAGCCTAGATATTACGATGATACGCCTAATCCATTEST: gi|164076475|gb|ES042806.1|ES042806
genomic: CTTGATGGAAAACCAAAACCTGTTGCTTCGAGAGCACAGTCCAGgtaatttccc ... ttgcttgcagCTCTGAGACTAATGAAGAGCCTAGATATTACGATGATACGCCTAATCCATT
EST: CCTGTTGCTTCGAGAGCACAGTCCAG CTCTGAGACTAATGAAGAGCCTAGATATTACGATGATACGCCTAATCCATT
genomic: CCTGTTGCTTCGAGAGCACAGTCCAGgtaatttccc ... ttgcttgcagCTCTGAGACTAATGAAGAGCCTAGATATTACGATGATACGCCTAATCCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTCAAGAATTTGGATAAGTTAGTGACTGATTTGCAGAGTGAGATTATCGATAAGCTTGATGGAAAACCAAAACCTGTTGCTTCGAGAGCACAGTCCAGgtaatttcccttattaagcaccaagaatttgatgcctcttagtgtttgatcattgggacttgcaacgaacatatgattgtagcttgtattgtcactgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA