1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTTCTTGTTTCTTAACTCAAAATGTAAGAGGTACTTCCATAACAAGTTGAAGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaaaactcagtaatttggatctgttttgttgtttgtactttgttttttttcattgatcctgatttgttaacattctaaaactctgtttcttttatag
species | Arabidopsis thaliana |
transcript | AT3G53020.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCAEST: gi|124705054|gb|EH796456.1|EH796456
genomic: GCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAEST: gi|116472836|gb|EG515428.1|EG515428
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAA
EST: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCAEST: gi|152038275|gb|BP812779.2|BP812779
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGC-AEST: gi|116410667|gb|EG453259.1|EG453259
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCAEST: gi|116452319|gb|EG494911.1|EG494911
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCAEST: gi|86078101|gb|DR373858.1|DR373858
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCAEST: gi|86082625|gb|DR378384.1|DR378384
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: GCCATCCAAGCTTGCATGGACTTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCAEST: gi|152035093|gb|BP844349.2|BP844349
genomic: GCCATCCAAGCTTGCATGGAC-TGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCCACCAAGAAGCCEST: gi|124798337|gb|EH888016.1|EH888016
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCC-ACCAAGAAGCC
EST: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAGEST: gi|125022493|gb|EL094762.1|EL094762
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAG
EST: TGGACTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCAEST: gi|116483020|gb|EG525612.1|EG525612
genomic: TGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCAEST: gi|164235477|gb|ES093220.1|ES093220
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: GAAAGCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCAEST: gi|116472837|gb|EG515429.1|EG515429
genomic: GAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCAEST: gi|116483018|gb|EG525610.1|EG525610
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCAEST: gi|125012334|gb|EL084603.1|EL084603
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAEST: gi|164081957|gb|ES129266.1|ES129266
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGA
EST: AAAGCAACACAAGAAGG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCEST: gi|164027455|gb|ES146678.1|ES146678
genomic: AAAGCAACACAAGAA-Ggtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCC
EST: CCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCEST: gi|125319201|gb|EL333286.1|EL333286
genomic: CCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACC
EST: CAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCAEST: gi|152038145|gb|BP809467.2|BP809467
genomic: CAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: GCCATCCAAGGTTGCATGGACTGCCATGTACAGAAAGCAACACCAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCAGCAAGAAGCCEST: gi|86081830|gb|DR377589.1|DR377589
genomic: GCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACAC-AAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCC
EST: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCAEST: gi|125284848|gb|EL298933.1|EL298933
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: CAACACAAGAAG GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
genomic: CAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTTGTTTCTTAACTCAAAATGTAAGAGGTACTTCCATAACAAGTTGAAGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaaaactcagtaatttggatctgttttgttgtttgtactttgttttttttcattgatcctgatttgttaacattctaaaactctgtttcttttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG