1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGAAGAAGATCAGGCTAGAGCAGGAGGATGAAGGTGTTCCTAGCACAGCAATCAGAGAAATCTCCCTCTTGAAAGAAATGCAGCACAGCAACATTGTCAAgtatgatgttaataccattgttgaaaactgattcagcatgatgactctggtaaacaattttgattgatgttttttgctacacag
species | Arabidopsis thaliana |
transcript | AT3G48750.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCAGAGAAATCTCCCTCTTGAAAGAAATGCAGCACAGCAACATTGTCAA ATTGCAGGATGTGGTGCACAGCGAGAAACGTTTGTATCTGGTTTTTGAGTAEST: gi|86036711|gb|DR332466.1|DR332466
genomic: ATCAGAGAAATCTCCCTCTTGAAAGAAATGCAGCACAGCAACATTGTCAAgtatgatgtt ... tgctacacagATTGCAGGATGTGGTGCACAGCGAGAAACGTTTGTATCTGGTTTTTGAGTA
EST: ATCAGAGAAATCTCCCTCTTGAAAGAAATGCAGCATAGCAACATTGTCAA ATTGCAGGATGTGGTGCACAGCGAGAAACGTTTGTATCTGGGTTTTTGAGTEST: gi|163979562|gb|ES021829.1|ES021829
genomic: ATCAGAGAAATCTCCCTCTTGAAAGAAATGCAGCACAGCAACATTGTCAAgtatgatgtt ... tgctacacagATTGCAGGATGTGGTGCACAGCGAGAAACGTTTGTATCTGG-TTTTTGAGT
EST: AGAGAAATCTCCCTCTTGAAAGAAATGCAGCATAGCAACATTGTCAA ATTGCAGGATGTGGTGCACAGCGAGAAACGTTTGTATCTGGTTTTTEST: gi|124717652|gb|EH809054.1|EH809054
genomic: AGAGAAATCTCCCTCTTGAAAGAAATGCAGCACAGCAACATTGTCAAgtatgatgtt ... tgctacacagATTGCAGGATGTGGTGCACAGCGAGAAACGTTTGTATCTGGTTTTT
EST: AGAAATCTCCCTCTTGAAAGAAATGCAGCACAGCAACATTGTCAA ATTGCAGGATGTGGTGCACAGCGAGAAACGTTTGTATCTGGEST: gi|86036710|gb|DR332465.1|DR332465
genomic: AGAAATCTCCCTCTTGAAAGAAATGCAGCACAGCAACATTGTCAAgtatgatgtt ... tgctacacagATTGCAGGATGTGGTGCACAGCGAGAAACGTTTGTATCTGG
EST: ATCAGAGAAATCTCCCTCTTGAAAGAAATGCAGCATAGCAACATTGTCAA ATTGCAGGATGTGGTGCACAGCGAGAAACGTTTGTATCTGGTTTTTGAGTAEST: gi|86036709|gb|DR332462.1|DR332462
genomic: ATCAGAGAAATCTCCCTCTTGAAAGAAATGCAGCACAGCAACATTGTCAAgtatgatgtt ... tgctacacagATTGCAGGATGTGGTGCACAGCGAGAAACGTTTGTATCTGGTTTTTGAGTA
EST: ATCAGAGAAATCTCCCTCTTGAAAGARATGCAGCATAGCAACATTGTCAA AATTGCAGGATGTGGTGCACAGCGAGAAACGTTTGTATCTGGTTTTTGGAG
genomic: ATCAGAGAAATCTCCCTCTTGAAAGAAATGCAGCACAGCAACATTGTCAAgtatgatgtt ... tgctacacagA-TTGCAGGATGTGGTGCACAGCGAGAAACGTTTGTATCTGGTTTTTG-AG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGAAGATCAGGCTAGAGCAGGAGGATGAAGGTGTTCCTAGCACAGCAATCAGAGAAATCTCCCTCTTGAAAGAAATGCAGCACAGCAACATTGTCAAgtatgatgttaataccattgttgaaaactgattcagcatgatgactctggtaaacaattttgattgatgttttttgctacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA