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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACAAACTCGGGACTGGTCTGGTAATATCTCGGAGACCAGACGGGTCATGGTCTGCTCCATCTGCCATACTATCAGTAGGTCTTGGATGGGGTGCACAGgtaaacttcatcttttccattcaagacatgcatgttagagttaaagatgcgttttcaatagccacataagaagatttgtactctttttgtcag

Basic information

species Arabidopsis thaliana
transcript AT3G43230.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G43230.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv11s0016g00400.t01 (Vitis vinifera), 5'ss of exon 3
ATACAAACTCGGGACTGGTCTGGTAATATCTCGGAGACCAGACGGGTCATGGTCTGCTCCATCTGCCATACTATCAGTAGGTCTTGGATGGGGTGCACAGgtaaacttcatcttttccattcaagacatgcatgttagagttaaagatgcgttttcaatagccacata----------agaagatttgtactctttttgtcag
 |||||||| || |||||| ||||  |  | || ||  |||| || ||||||||||| |||||||||||| | || || ||| | ||||||||||| ||||||||| |    | |   ||      | | ||| |||  ||   ||      || | ||||  | ||              | | | | |    ||||||   
TTACAAACTTGGCACTGGTTTGGTTGTTGCCCGAAGGTCAGATGGATCATGGTCTGCACCATCTGCCATATTCTCTGTCGGTTTAGGATGGGGTGCTCAGgtaaacataccatctgttat--ggttcttccattttatggtgccagtcagtgttaccatagttatatgtttttttcttgagaaactagaatcagttttgttc-