1 5' 3' | 2 5' 3' | 3 5' 3' |
CTACACTGCCAAGGACTATGCTGATATTCTGGAGTTTCTTGTTGAACGGTGGAATGTGGAGACTTTGACAGACCTTTCTAGTGAAGGACACAGGGCCCAGgtaaattacctccatgaaacttcttgtgatgaaacctccaagtttatgaatacttataacaatcttgtagtagtttttggtcatgaatactatattagatatactgttttgtgtttttgatgatctgatcgggacctaaacttgaattctgactctatcatttcctttgacag
species | Arabidopsis thaliana |
transcript | AT3G02630.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGAATGTGGAGACTTTGACAGACCTTTCTAGTGAAGGACACAGGGCCCAG GACTTTGTCTGCGGACTACCTGCAAGEST: gi|164186493|gb|EL983731.1|EL983731
genomic: GGAATGTGGAGACTTTGACAGACCTTTCTAGTGAAGGACACAGGGCCCAGgtaaattacc ... cctttgacagGACTTTGTCTGCGGACTACCTGCAAG
EST: GACTTTGACAGACCTTTCTAGTGAAGGACACAGGGCCCAG GACTTTGTCTGCGGACTACCTGCAAGAATCCGTAAAATTGAAGAGAGAGCTEST: gi|124939232|gb|EL015790.1|EL015790
genomic: GACTTTGACAGACCTTTCTAGTGAAGGACACAGGGCCCAGgtaaattacc ... cctttgacagGACTTTGTCTGCGGACTACCTGCAAGAATCCGTAAAATTGAAGAGAGAGCT
EST: AAGGACACAGGGCCCAG GACTTTGTCTGCGGACTACCTTGCAAGAATCCGTAAAATTGAAGAGAGAGCEST: gi|125184084|gb|EL199038.1|EL199038
genomic: AAGGACACAGGGCCCAGgtaaattacc ... cctttgacagGACTTTGTCTGCGGACTACC-TGCAAGAATCCGTAAAATTGAAGAGAGAGC
EST: GACAGACCTTTCTAGTGAAGGACACAGGGCCCAG GACTTTGTCTGCGGACTACCTGCAAGAATCCGTAAAATTGAAGAGEST: gi|86079452|gb|DR375209.1|DR375209
genomic: GACAGACCTTTCTAGTGAAGGACACAGGGCCCAGgtaaattacc ... cctttgacagGACTTTGTCTGCGGACTACCTGCAAGAATCCGTAAAATTGAAGAG
EST: GGAATGTGGAGACTTTGACAGACCTTTCTAGTGAAGGACACAGGGCCCAG GACTTTGTCTGCGGACTACCTGCAAGAATCCGTAAAATTGAAGAGAGAGCT
genomic: GGAATGTGGAGACTTTGACAGACCTTTCTAGTGAAGGACACAGGGCCCAGgtaaattacc ... cctttgacagGACTTTGTCTGCGGACTACCTGCAAGAATCCGTAAAATTGAAGAGAGAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACACTGCCAAGGACTATGCTGATATTCTGGAGTTTCTTGTTGAACGGTGGAATGTGGAGACTTTGACAGACCTTTCTAGTGAAGGACACAGGGCCCAGgtaaattacctccatgaaacttcttgtgatgaaacctccaagtttatgaatacttataacaatcttgtagtagtttttggtcatgaatactatattagatatactgttttgtgtttttgatgatctgatcgggacctaaacttgaattctgactctatcatttcctttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA