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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGGTACTGGAGTCCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCTGTTGATCTTGGTGCATCATGgtaatctcacggctctttcatcctgtcattagatgatgttttggttttggtttttggttaactttaggctaacacagcaacatcgttatgtcacag

Basic information

species Arabidopsis thaliana
transcript AT2G43020.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G43020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os04g53190.1 (Oryza sativa), 5'ss of exon 4
GTTATGGTACTGGAGTCCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCTGTTGATCTTGGTGCATCATGgtaatctcacggctctttcatcctgtc---attagatgatgttttggttttggttt-ttggttaactttaggctaacacagcaacatcgttatgtcacag----
||| |  | || || || |||||||| || |||||  || |||||||||||||||| ||||| |||||||||||||| || ||||| |||| |  |  |         ||  | ||   ||||  |||  |  |||     |||| |  |  | | |||   | |  |  |  |    || ||| |       
GTTGTTCTTCTAGAATCTCGTGACAGGATAGGTGGTAGAATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTGgtgaggttcctctctgacaatattttctgaattatttgaaatggtggcaaaagtttatctggaaccattatttttaatccacttccattttgtgtgagcatcag

upper sequence: AT2G43020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os04g53195.1 (Oryza sativa), 5'ss of exon 3
GTTATGGTACTGGAGTCCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCTGTTGATCTTGGTGCATCATGgtaatctcacggctctttcatcctgtcattagatgatgttttggttttggtttttggttaactttaggctaacacagcaacatcgttatgtcacag
||| |  | || || || |||||||| || |||||  || |||||||||||||||| ||||| |||||||||||||| || ||||| |||| |      || || |     ||| || ||  |  ||  ||  |||    |  |||  ||                                   
GTTGTTCTTCTAGAATCTCGTGACAGGATAGGTGGTAGAATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTGgtga------ggttcctct---ctgacaatattttctgaatta-tttgaaatggtggcaaaag---------------------------------

upper sequence: AT2G43020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G000052_T01 (Zea mays), 5'ss of exon 4
GTTATGGTACTGGAGTCCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCTGTTGATCTTGGTGCATCATGgtaatctcacggctctttcatcctgtcattagatgatgttttggttttggtttttggttaactttaggctaacacagcaacatcgttatgtcacag
|||||  ||||||| |||||||| || ||||||||  ||||||||||||| ||||| ||||| ||||| || ||| | || ||||| |||| |  ||     |||||    || |||  |  ||        ||||   ||   ||       |   |        || |||  ||||    |||
GTTATTCTACTGGAATCCCGTGATAGGATTGGTGGCAGAGTTCACACTGACTACTCTTTTGGGTTTCCGGTCGATTTGGGAGCATCTTGgtgagttcc--attctttttagctttcaccatgtgcc-caaaagtttatcttgagggaatgtcatgaacatttttttcatcatttttattcatcag

upper sequence: AT2G43020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G396856_T02 (Zea mays), 5'ss of exon 4
GTTATGGTACTGGAGTCCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCTGTTGATCTTGGTGCATCATGgtaatctcacggctctttcatcctgtcattagatgatgttttggttttggtttttggttaactttaggctaacacagcaacatcgttatgtcacag
|||||  | ||||| || ||||| |||||||||||  ||||||||||||| ||||| ||||| ||||| || ||| | || ||||| |||| |  ||     |||||    || |||  |  ||        |||    ||   ||    | ||  |         || |||   |||     ||
GTTATTCTTCTGGAATCTCGTGATAGAATTGGTGGCAGAGTTCACACTGACTACTCTTTTGGGTTTCCAGTCGATTTGGGAGCATCTTGgtgagttcc--attcttttgaactttcaccatgtgcc-caaaagttcatcttgaaggaatgcattgagtgtttttttcatcatttctattgagaag

upper sequence: AT2G43020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G14620.1 (Glycine max), 5'ss of exon 3
-GTTATGGTACTGGAGTCCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCTGTTGATCTTGGTGCATCATGgtaatctcacggctctttcatcctgtcattagatgatgttttggttttggtttttggttaactttaggctaacacagcaacatcgttatgtcacag
 ||| |  |  | |||||  | || ||||||||||| ||| |||||||||||||||||||||||||||||||||| || || ||||||||||||        |||||| ||    | |||  |  || | ||   ||||  ||||   | | |||    ||   |   ||| |  | |  |  || 
GGTTGTTCTCTTAGAGTCAAGGGATAGAATTGGTGGCCGAATTCACACTGATTACTCATTTGGTTTTCCTGTTGACCTGGGAGCATCATggtaaatcttattctcttt-atttgcttattgcaaaatttcttccatttgtctttt---ttattttgttgtagttctaaaacttactaacttttca-

upper sequence: AT2G43020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G45140.1 (Glycine max), 5'ss of exon 3
GTTATGGTACTGGAGTCCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCTGTTGATCTTGGTGCATCATGgtaatctcacggctctttcatcc--------tgtcattagatgatgttttggttttggtttttggttaactttaggctaacacagcaacatcgttatgtcacag
|||||  | || || || || || |||  |||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |      ||||||  ||         | |  ||  ||| ||    |  | |||  |||    |  |||  | ||  | |     ||   | ||   |||
GTTATTCTTCTAGAATCACGGGAAAGACCTGGTGGCCGAATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTGgtaaaccttacactctttgttctcctttttttattttttcatgttgacaagaatgtggcatttctccattttttag-tattaaaaatggatgactgtgattcag

upper sequence: AT2G43020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G41570.3 (Glycine max), 5'ss of exon 3
GTTATGGTACTGGAGTCCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCTGTTGATCTTGGTGCATCATGgtaatctcacggctctttcatcctgtcatta-gatgatgtt---ttggttttggtttttggttaactttaggctaacacagcaacatcgttatgtcacag
||| |  |  | |||||  | || ||||||||||| ||| ||||||||||||||||||||||||||||||| ||  | || ||||||||||||    ||  |||||| |||   | |||| ||  ||||    ||  ||    |||||  ||   |||    ||  ||   ||  |    || |  |||
GTTGTTCTCTTAGAGTCAAGGGAAAGAATTGGTGGCCGAATTCACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATGgtaaagctacttctcttt-atctgcttattatgagaatgtaaaatttcttccatttttttatttgttttt--ttagtactaaaagttacacatttttcag

upper sequence: AT2G43020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA14G03610.2 (Glycine max), 5'ss of exon 3
GTTATGGTACTGGAGTCCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCTGTTGATCTTGGTGCATCATGgtaa-------tctcacggctctttcatcctgtcattagatgatgttttggttttggtttttggttaactttaggctaacacagcaacatcgttatgtcacag
|||||  | || || || || || ||| ||||||| ||| |||||||||| ||||||||||| ||||||||||| || |||||||| ||||||        |||   | |||    |  | |  ||  ||| ||    |  | | |  |||    |  |||  | ||  | |     ||   | ||   |||
GTTATTCTTCTAGAATCACGAGAAAGACTTGGTGGCCGAATTCACACTGACTACTCATTTGGCTTTCCTGTTGACCTGGGTGCATCGTGgtaaagcttaccctctttgttctcctttttttttcttc-atgttgacaagaatgttgcatttctccattttttag-tattaaaaatggatgactgtgattcag

upper sequence: AT2G43020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv12s0028g01120.t01 (Vitis vinifera), 5'ss of exon 3
GTTATGGTACTGGAGTCCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCTGTTGATCTTGGTGCATCATGgtaatctcacggctctttcatcctgtcattagatgatgttttggttttggtttttggttaactttaggctaacacagcaacatcgttatgtcacag
||| |  |  |||| || ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| || || |||||||||||| ||      ||||| | | |    || | | |    |  ||       |   || |||| ||    ||  |     ||   || |     ||
GTTGTTCTGTTGGAATCGCGTGATAGAATTGGTGGACGGGTTCATACTGATTACTCATTTGGTTTTCCTGTTGACCTGGGAGCATCATGgtaaactttta--tcttttagctttctttttgctaaaacct--gtggatacctcctgtcaactctaattaaaatctctttcaaaattgtactcaag