1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAGGTTCCCACCTATACAGGCCAAAGAATTGCCATCTCTGCAGTGTACGGTGTCTGTCTTGACTGATTATGAAGATGCAGAAGATTACCTTGATTGGGAGgtatattctcttcactcttttcttacaatatgtcaatctcacgaattaagaatatagttgccaagaaggaatgcatactattcaatgtacacagccaata...
species | Arabidopsis thaliana |
transcript | AT2G38710.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTCTGTCTTGACTGATTATGAAGATGCAGAAGATTACCTTGATTGGGAG GTTGGTAAGCATGGTATAATCATTGAGTTTACTGAACCTGAGACTAATACAEST: gi|164198190|gb|ES005309.1|ES005309
genomic: TGTCTGTCTTGACTGATTATGAAGATGCAGAAGATTACCTTGATTGGGAGgtatattctc ... cactctaaagGTTGGTAAGCATGGTATAATCATTGAGTTTACTGAACCTGAGACTAATACA
EST: CTGATTATGAAGATGCAGAAGATTACCTTGATTGGGAG GTTGGTAAGCATGGTATAATCATTGAGTTTACTGAACCTGAGACTAATACAEST: gi|163983514|gb|ES134000.1|ES134000
genomic: CTGATTATGAAGATGCAGAAGATTACCTTGATTGGGAGgtatattctc ... cactctaaagGTTGGTAAGCATGGTATAATCATTGAGTTTACTGAACCTGAGACTAATACA
EST: CTTGACTGATTATGAAGATGCAGAAGATTACCTTGATTGGGGAG GTTGGTAAGCATGGTATAATCATTGAGTTTACTGAACCTGAGACTAATACEST: gi|164137955|gb|ES101408.1|ES101408
genomic: CTTGACTGATTATGAAGATGCAGAAGATTACCTTGATT-GGGAGgtatattctc ... cactctaaagGTTGGTAAGCATGGTATAATCATTGAGTTTACTGAACCTGAGACTAATAC
EST: CTGATTATGAAGATGCAGAAGATTACCTTGATTAGGGAG GTTGGTAAGCATGGTATAAATCATTGAGTTTACTGAACCTGAGACTAATAEST: gi|86077035|gb|DR372792.1|DR372792
genomic: CTGATTATGAAGATGCAGAAGATTACCTTGATT-GGGAGgtatattctc ... cactctaaagGTTGGTAAGCATGGTAT-AATCATTGAGTTTACTGAACCTGAGACTAATA
EST: TGTCTGTCTTGACTGATTATGAAGATGCAGAAGATTACCTTGATTGGGAG GTTGGTAAGCATGGTATAATCATTGAGTTTACTGAACCTGAGACTAATACA
genomic: TGTCTGTCTTGACTGATTATGAAGATGCAGAAGATTACCTTGATTGGGAGgtatattctc ... cactctaaagGTTGGTAAGCATGGTATAATCATTGAGTTTACTGAACCTGAGACTAATACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGTTCCCACCTATACAGGCCAAAGAATTGCCATCTCTGCAGTGTACGGTGTCTGTCTTGACTGATTATGAAGATGCAGAAGATTACCTTGATTGGGAGgtatattctcttcactcttttcttacaatatgtcaatctcacgaattaagaatatagttgccaagaaggaatgcatactattcaatgtacacagccaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaggaa