1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAACCAAAAAAAGGTTCCAAGAAGAAGGGTACATCACTAGTTACTCGTAGTGAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGgttctttgagtttttgttttccaaattcatttgcatgattttacattttttacattggaagtttaaagggatcttgtgttgtggacag
species | Arabidopsis thaliana |
transcript | AT2G33990.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAG GCTAGAAAAAGCTTACGGCGTCTAAAAGGAATTGCAAGAGCAAAGTTATCAEST: gi|125275028|gb|EL289113.1|EL289113
genomic: GTGAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGgttctttgag ... ttgtggacagGCTAGAAAAAGCTTACGGCGTCTAAAAGGAATTGCAAGAGCAAAGTTATCA
EST: GTGAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAG GCTAGAAAAAGCTTACGGCGTCTAAAAGGAATTGCAAGAGCAAAGTTATCEST: gi|125259123|gb|EL273208.1|EL273208
genomic: GTGAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGgttctttgag ... ttgtggacagGCTAGAAAAAGCTTACGGCGTCTAAAAGGAATTGCAAGAGCAAAGTTATC
EST: GTGAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAG GCTAGAAAAAGCTTACGGCGTCTAAAAGGAATEST: gi|86072244|gb|DR368001.1|DR368001
genomic: GTGAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGgttctttgag ... ttgtggacagGCTAGAAAAAGCTTACGGCGTCTAAAAGGAAT
EST: GTGAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAG GCTAGAAAAAGCTTACGGCGTCTAAAAGGAATTGCAAGAGCAAAGTTATCAEST: gi|164229587|gb|ES040734.1|ES040734
genomic: GTGAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGgttctttgag ... ttgtggacagGCTAGAAAAAGCTTACGGCGTCTAAAAGGAATTGCAAGAGCAAAGTTATCA
EST: GTGAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAG GCTAGAAAA-GCTTACGGCGTCTAAAAGGAATTGCAAG
genomic: GTGAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGgttctttgag ... ttgtggacagGCTAGAAAAAGCTTACGGCGTCTAAAAGGAATTGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACCAAAAAAAGGTTCCAAGAAGAAGGGTACATCACTAGTTACTCGTAGTGAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGgttctttgagtttttgttttccaaattcatttgcatgattttacattttttacattggaagtttaaagggatcttgtgttgtggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT