1 5' 3' | 2 5' 3' | 3 5' 3' |
GAAAATGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactacattttccattgttattgcttgctaagcgtcggtctagctttatgtattagtttataagaaacgctgagcggtgatttgaagtttaagagca...
species | Arabidopsis thaliana |
transcript | AT2G30410.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTG GCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCAEST: gi|164136511|gb|ES055733.1|ES055733
genomic: ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCA
EST: ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTG GCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCEST: gi|164190655|gb|ES031732.1|ES031732
genomic: ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCC
EST: CGAGTCTGCATTGGCTGACCTCAAGTCCACTTTG GCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCAEST: gi|124727131|gb|EH818533.1|EH818533
genomic: CGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCA
EST: TTTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTG GCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCEST: gi|124925894|gb|EL003818.1|EL003818
genomic: -TTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCC
EST: ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTG GCGGAATTGGAAGAGACGGATGAGAAGGEST: gi|124966798|gb|EL040878.1|EL040878
genomic: ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGG
EST: TTGCCACAAACGTCTCGAGTCTGCATTAGGCTGACCTCAAGTCCACTTTG GCGGAATTGGAAGAGACGGAEST: gi|164104260|gb|ES134447.1|ES134447
genomic: TTGCCACAAACGTCTCGAGTCTGCATT-GGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGA
EST: GTCTGCATTGGCTGACCTCAAGTCCACTTTG GCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCAEST: gi|86074489|gb|DR370246.1|DR370246
genomic: GTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCA
EST: ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTG GCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCAEST: gi|125052468|gb|EL124244.1|EL124244
genomic: ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCA
EST: AAGTCCACTTTG GCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCAEST: gi|125147133|gb|EL181505.1|EL181505
genomic: AAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCA
EST: ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTG GCGGAATTGGA
genomic: ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAATGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactacattttccattgttattgcttgctaagcgtcggtctagctttatgtattagtttataagaaacgctgagcggtgatttgaagtttaagagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taagaaa