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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGAGGCTTCCTTTGATTCAAGGTCCTTCCTTTGTCTTTCTGGCTCCGGCTTTGGCTATAATAAACTCTCCAGAGTTTCAAGGTTTGAATGGAAATAATgtaagtttgaaagaagaacctcttctgctatctatgattaagtaaaatgtcagtcattgggttccgttgaggatatggtgatgttactatcgaaatgtag...

Basic information

species Arabidopsis thaliana
transcript AT2G27810.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27810.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G19420.1 (Glycine max), 5'ss of exon 3
---GTCGAGGCTTCCTTTGATTCAAGGTCCTTCCTTTGTCTTTCTGGCTCCGGCTTTGGCTATAATAAACTCTCCAGAGTTTCAAGGTTTGAATGGAAATAATgtaagtttgaaagaagaacctcttctgctatctatgattaagtaaaatgtcagtcattgggttccgttgaggatatggtgatgttactatcgaaatgtag
    || ||| | || |||||||| || ||||| ||||| | ||| || || ||  | || ||||| ||||| |||||||||||||| ||||||||||||  | |   | |      |   | |  | |   |      |  || |  | |  | |   |   |          | |||| |  ||  |  || ||  |    
TGGCTCTAGGTTGCCCTTGATTCAGGGCCCTTCTTTTGTTTATCTCGCACCTGCACTCGCAATAATCAACTCCCCAGAGTTTCAAGGATTGAATGGAAATgtt-tgtatctcttcccatttctttatgtttcagaagataggaaatggattccctgcagtcatgcattcacacagttatgat--tgacatcattgatgtagga

upper sequence: AT2G27810.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G05280.1 (Glycine max), 5'ss of exon 3
---GTCGAGGCTTCCTTTGATTCAAGGTCCTTCCTTTGTCTTTCTGGCTCCGGCTTTGGCTATAATAAACTCTCCAGAGTTTCAAGGTTTGAATGGAAATAATgtaagtttgaaagaagaacctcttct-------gctatctatgat-taagtaaaatgtca---gtcattgggttccgt--tgaggatatggtgatgttactatcgaaatg-tag---------------------------------------------
   ||||||| | || ||||| ||||| ||||| ||||| | |||||||||||  ||||| || || ||||| || || |||||||| || |||||||||  |||   |||      |   | | || |       | | | | || | | ||| |  ||| |   |||||||| ||  ||  |    ||||||||| |||  |   |   |  | |                                             
TGGGTCGAGGTTGCCCTTGATACAAGGGCCTTCTTTTGTTTATCTGGCTCCGGTGTTGGCCATCATCAACTCCCCCGAATTTCAAGGATTAAATGGAAATg-tgtgtttttcttctcatttctttttgtttcggatgatgtttctgttgttagttatttgtaatatgtcattggcttttgtattatctatatggtgaggtttttgatggggtaattgatactaagactgatgatgattttttttttttgtatcaattttcag

upper sequence: AT2G27810.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv06s0061g01310.t01 (Vitis vinifera), 5'ss of exon 3
---GTCGAGGCTTCCTTTGATTCAAGGTCCTTCCTTTGTCTTTCTGGCTCCGGCTTTGGCTATAATAAACTCTCCAGAGTTTCAAGGTTTGAATGGAAATA-ATgtaagtt-tgaaagaagaacctcttctgcta--tctatgattaagtaaaatgtcagtcattgggttccgttgaggatatggtgatgttactatcgaaatgtag
     ||||| | || ||||| || |||||||| ||||| | | ||||||| ||| | || ||||| |||||||| ||||| ||||| ||||||||||||  ||||   |  ||| | | | |  | |   ||||  |  ||||   |||  | ||||  |     ||||  | | |  || || |  | |   |  |   |     
TGGCACGAGGTTGCCCTTGATACAGGGTCCTTCTTTTGTTTATTTGGCTCCAGCTCTTGCGATAATCAACTCTCCTGAGTTCCAAGGATTGAATGGAAATgtatgtttctagtgatatatgtatttatgtggctacattcatgagatagtgtattgtccttttgctggtt--ggttactatgtgatcctatccattccttga-----