1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTTCATTGCTGGTATAGCTGATGATAATGGCTATGGTTGGGCCATAGCAAAATCTCTTGCTGCTGCTGGAGCTGAAATATTGGTTGGGACTTGGGTTCCTgtaagtcatttttggttcagctgcttttagtttccttcattgctaaattatactaacctatgaatggatggtctactag
species | Arabidopsis thaliana |
transcript | AT2G05990.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AATCTCTTGCTGCTGCTGGAGCTGAAATATTGGTTGGGACTTGGGTTCCT GCACTTAATATATTTGAGACAAGCTTGAGACGTGGAAAATTCGACCAGTCAEST: gi|124845977|gb|EH930414.1|EH930414
genomic: AATCTCTTGCTGCTGCTGGAGCTGAAATATTGGTTGGGACTTGGGTTCCTgtaagtcatt ... ggtctactagGCACTTAATATATTTGAGACAAGCTTGAGACGTGGAAAATTCGACCAGTCA
EST: GCTGGAGCTGAAATATTGGTTGGGACTTGGGTTCCT GCACTTAATATATTTGAGACAAGCTTGAGACGTGGAAAATTCGACCAGTCAEST: gi|164198897|gb|ES093122.1|ES093122
genomic: GCTGGAGCTGAAATATTGGTTGGGACTTGGGTTCCTgtaagtcatt ... ggtctactagGCACTTAATATATTTGAGACAAGCTTGAGACGTGGAAAATTCGACCAGTCA
EST: AATCTCTTGCTGCTGCTGGAGCTGAAATATTGGTTGGGACTTGGGTTCCT GCACTTAATATATTTGAGACAAGCTTGAGACGTGGAAAA
genomic: AATCTCTTGCTGCTGCTGGAGCTGAAATATTGGTTGGGACTTGGGTTCCTgtaagtcatt ... ggtctactagGCACTTAATATATTTGAGACAAGCTTGAGACGTGGAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCATTGCTGGTATAGCTGATGATAATGGCTATGGTTGGGCCATAGCAAAATCTCTTGCTGCTGCTGGAGCTGAAATATTGGTTGGGACTTGGGTTCCTgtaagtcatttttggttcagctgcttttagtttccttcattgctaaattatactaacctatgaatggatggtctactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA