1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCATCGGATGGGATTAGCAAAGTGGTGTTTGGTGGTCAAGTCACCGATGAAGAAGTTGAGAGCTTGAACCGCAGgttaaacttacttccttatcactatttcatttccaattcgatttctttgaaaattagtttccaattttgtccatatatctgaaagttgaaaactttttgt...
species | Arabidopsis thaliana |
transcript | AT1G78150.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CACCGATGAAGAAGTTGAGAGCTTGAACCGCAG GAAGCCTTGCTCAGAACATAAAAATGAAGGAGATAACTGGCAGTGGGATCTEST: gi|116438866|gb|EG481458.1|EG481458
genomic: CACCGATGAAGAAGTTGAGAGCTTGAACCGCAGgttaaactta ... atgtcattagGAAGCCTTGCTCAGAACATAAAA-TGAAGGAGATAACTGGCAGTGGGATCT
EST: GTGTTTGGTGGTCAAGTCACCGATGAAGAAGTTGAGAGCTTGAACCGCAG GAAGCCTTGCTCAGAACATAAAATGAAGGAGATAACTGGCAGTGGGATCTTEST: gi|124706980|gb|EH798382.1|EH798382
genomic: GTGTTTGGTGGTCAAGTCACCGATGAAGAAGTTGAGAGCTTGAACCGCAGgttaaactta ... atgtcattagGAAGCCTTGCTCAGAACATAAAATGAAGGAGATAACTGGCAGTGGGATCTT
EST: GTGTTTGGTGGTCAAGTCACCGATGAAGAAGTTGAGAGCTTGAACCGCAG GAAGCCTTGCTCAGAACATAAAAEST: gi|47831749|gb|CK121433.1|CK121433
genomic: GTGTTTGGTGGTCAAGTCACCGATGAAGAAGTTGAGAGCTTGAACCGCAGgttaaactta ... atgtcattagGAAGCCTTGCTCAGAACATAAAA
EST: GTGTTTGGTGGTCAAGTCACCGATGAAGAAGTTGAGAGCTTGAACCGCAG GAAGCCTTGCTCAGAACATAAAATGAAGGAGATAACTGGCAGTGGGATCTT
genomic: GTGTTTGGTGGTCAAGTCACCGATGAAGAAGTTGAGAGCTTGAACCGCAGgttaaactta ... atgtcattagGAAGCCTTGCTCAGAACATAAAATGAAGGAGATAACTGGCAGTGGGATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATCGGATGGGATTAGCAAAGTGGTGTTTGGTGGTCAAGTCACCGATGAAGAAGTTGAGAGCTTGAACCGCAGgttaaacttacttccttatcactatttcatttccaattcgatttctttgaaaattagtttccaattttgtccatatatctgaaagttgaaaactttttgt
- - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT