1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAAGCTACACAAGAAAAAGATGTAACTGGCGAAGTTTTGAGAACTCATGAAGCTATACAgtgagtgagacaatcttgagtttgttttttgtttcttgtaaatcaacttgctttctctatttatgttgtagctttttttctatgtctttggag
species | Arabidopsis thaliana |
transcript | AT1G77810.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAGAAAAAGATGTAACTGGCGAAGTTTTGAGAACTCATGAAGC--T--- --AT-ACA-GTCGTTGGATAAGTCAGTTTCTACACTTTCTTCTACAAGGAGEST: gi|301502422|gb|HO207962.1|HO207962
genomic: CAAGAAAAAGATGTAACTGGCGAAGTTTTGAGAACTCATGAAGCTATACAgtgagtgaga ... gtctttggagGGATGACAGGTCGTTGGATAAGTCAGTTTCTACACTTTCTTCTACAAGGAG
EST: CAAGAAAAAGATGTAACTGGCGAAGTTTTGAGAACTCATGAAGCTATACA GGATGACAGGTCGTTGGATAAGTCAGTTTCTACACTTTCTTCTACAAGGAG
genomic: CAAGAAAAAGATGTAACTGGCGAAGTTTTGAGAACTCATGAAGCTATACAgtgagtgaga ... gtctttggagGGATGACAGGTCGTTGGATAAGTCAGTTTCTACACTTTCTTCTACAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGCTACACAAGAAAAAGATGTAACTGGCGAAGTTTTGAGAACTCATGAAGCTATACAgtgagtgagacaatcttgagtttgttttttgtttcttgtaaatcaacttgctttctctatttatgttgtagctttttttctatgtctttggag
- - - - - AAGAAA
- - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - TGAAGC