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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACCAAAATATACCACCCTAATGTCGATGAAATgtgagttcaatcgaatcagtagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttgttatccctctttgtatgtggttatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G63800.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63800.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os10g31000.1 (Oryza sativa), 5'ss of exon 3
GTGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACCAAAATATACCACCCTAATGTCGATGAAATgtgagttcaatcgaatcagtagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttgttatccctctttgtatgtggttatgcag
|||| |||||| | ||||| ||| | |||||||| |||||||| |||||||| ||  |||||||| ||| ||| || || || |||||||| |||||||||||||    ||   ||    | | | |||   ||| |||||      ||| |  ||   |  | || |||| |  || |     |  ||| |  ||   ||| ||
GTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCATATCCTTACAAATCTCCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAATgtgag---gatttgatgtccatacccttttctggaatgattgaag--cttgtgtaa---tcaattgttgctgacctgct----tttgttggacttgaaaatgtag

upper sequence: AT1G63800.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G150867_T02 (Zea mays), 5'ss of exon 3
GTGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACCAAAATATACCACCCTAATGTCGATGAAATgtgagttcaatcgaatcagtagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttgttatccctctttgtatgtggttatgcag
|| | |||| | | ||||| ||||| || ||||| |||||||| ||||| |||||  |||||||||| |  || ||||| ||||| |||||||||||||||||||| |  | |||      || || ||         |||     |    |  |||||| |         |  |    |  |||   || |||      |||||
GTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTATCCTTACAAATCCCCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtacttttgaactcaatgacctgttaccttgtcaatttcaaccacattaaaaatctag--------ctcctaaccactcctggatgaatgcaacc-tgcag

upper sequence: AT1G63800.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: AC149818.2_FGT006 (Zea mays), 5'ss of exon 3
GTGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACCAAAATATACCACCCTAATGTCGATGAAATgtgagttcaatcgaatcagtagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttgttatccctctttgtatgtggttatgcag
|||| |||||||| ||||| ||| | || || || |||||||| ||||| |||||  | |||||||| |  || ||||| ||||| |||||||| |||||||||||    | |||      || || ||       |  | |  |||   | | | | |   | |   ||||  |    |   ||   || |||      |||||
GTGTATGGAAGATTAGAGTAGAATTGCCAGACGCATATCCTTACAAATCCCCATCGATCGGTTTCATCAATAAGATATATCACCCAAATGTCGACGAAATgtgagtagttttgaactcaatgaactgttacc----ttgtcaaattcaaccacgacaac---aatctagctt-ctaaccacttctggctgaatgcaaac-tgcag

upper sequence: AT1G63800.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G053764_T06 (Zea mays), 5'ss of exon 2
GTGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACCAAAATATACCACCCTAATGTCGATGAAATgtgagttcaatcgaatcagtagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttgttatccctctttgtatgtggttatgcag
|||| |||||| | || || ||||| |||||||| |||||||| ||||| || ||  | || ||||| | ||| || || ||||||||||||||||| |||||||    || |  | |    || ||||       |  | | |||| |      | |    | |  | ||||  ||||   | | ||||  ||     ||||||
GTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCTAATGTCGATGAGATgtgagcattatggtcttaaactattttttcttattttattgaagttcatgtatggagttaacatt--tccttacctgtt---cttatttggctgcaaa-atgcag

upper sequence: AT1G63800.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G37650.1 (Glycine max), 5'ss of exon 3
GTGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACCAAAATATACCACCCTAATGTCGATGAAATgtgagtt---caatcgaatcagtagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttg----ttatccctctttgtatgtggttat-gcag----------------------------------------
||||||||||| |||| || || || |||||||||||||||||||| ||||||||| |||| ||  | | |||||| | ||| |||||||| |||||  ||| ||||     |  | | |  ||| |   ||| |  | || |||| |    | |    | |   | |       ||  |     |||      ||| |       || |||                                         
GTGTGTGGAAGGTAAGGGTGGAGCTACCTGATGCTTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGGTgtaagttgtttcactgcaaccatagcttcattgaatcattgtttatatcatatttaagcagcacaattatgctccatgggaagtctattggctgttgcacaaacacattgcaaaactcacttgctcattaatatgattttctctgatgtttag

upper sequence: AT1G63800.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G01940.3 (Glycine max), 5'ss of exon 3
GTGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACCAAAATATACCACCCTAATGTCGATGAAATgtgagttcaatcgaatcag---tagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttg----ttatccctctttgtatgtggttat-gcag----------------------------------------
||||||||||  |||| || || || |||||||| ||||||||||| ||||||||| |||| ||  | | |||||| | ||| |||||||| ||||| |||| ||||   || |  |||   ||| |   ||| |  | || |||| |    | |    | |   | |       ||  |     |||      ||| |       || |||                                         
GTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATgtaagttgtttcaatgcagccatagcttcattgaataattgtttatatcatatttaagcagcacaaatatgctccatgggaagtctattggctgttgcacacacacatagcaaaactcactagctcataaatatggttttctcttatgtttag