1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGTTGGTGTTACACTTGGACCCAAAGGACGAAATGTTGTTCTTGAGAGCAAGTATGGATCACCACGAATTGTTAATGATGGTGTGACTGTTGCAAGAGAGgtatggaattattacccctctgataatgatttttgttctcattcaactgagtcttagagtttcaaactttctcctgtag
species | Arabidopsis thaliana |
transcript | AT1G55490.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTATGGATCACCACGAATTGTTAATGATGGTGTGACTGTTGCAAGAGAG GTTGAGTTGGAAGACCCGGTTGAGAACATTGGCGCTAAGCTTGTGAGGCAAEST: gi|164016063|gb|ES176456.1|ES176456
genomic: AGTATGGATCACCACGAATTGTTAATGATGGTGTGACTGTTGCAAGAGAGgtatggaatt ... tctcctgtagGTTGAGTTGGAAGACCCGGTTGAGAACATTGGCGCTAAGCTTGTGAGGCAA
EST: GATGGTGTGACTGTTGCAAGAGAG GTTGAGTTGGAAGACCCGGTTGAGAACATTGGCGCTAAGCTTGTGAGGCAAEST: gi|125265165|gb|EL279250.1|EL279250
genomic: GATGGTGTGACTGTTGCAAGAGAGgtatggaatt ... tctcctgtagGTTGAGTTGGAAGACCCGGTTGAGAACATTGGCGCTAAGCTTGTGAGGCAA
EST: TCACCACGAATTGTTAATGATGGTGTGACTGTTGCAAGAGAG GTTGAGTTGGAAGACCCGGTTGAGAACATT
genomic: TCACCACGAATTGTTAATGATGGTGTGACTGTTGCAAGAGAGgtatggaatt ... tctcctgtagGTTGAGTTGGAAGACCCGGTTGAGAACATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGGTGTTACACTTGGACCCAAAGGACGAAATGTTGTTCTTGAGAGCAAGTATGGATCACCACGAATTGTTAATGATGGTGTGACTGTTGCAAGAGAGgtatggaattattacccctctgataatgatttttgttctcattcaactgagtcttagagtttcaaactttctcctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA